View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0692_low_2 (Length: 539)
Name: NF0692_low_2
Description: NF0692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0692_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 280 - 528
Target Start/End: Complemental strand, 19755089 - 19754855
Alignment:
| Q |
280 |
gatccatgaaaaccactgatagttgtttagaaagttttcacttcttgatattttaataaatcaatgattattaggatagtaaaatttgtgacttgagaat |
379 |
Q |
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| T |
19755089 |
gatccatgaaaaccactgatagttctttagaaagttttcacttcttgatattttaataaatcaataattattaggatagtaaaatttgtgacttgagaat |
19754990 |
T |
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| Q |
380 |
gaatgctatatcctataaacctctgttttgttaatgagtttctatttaagacaaacccatcattagaatctgagtttgatctttagctgaaacaattttt |
479 |
Q |
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| T |
19754989 |
gaatgctatat--------------ttttgttaatgagtttctatttaagacaaacccatcattagaatctgagtttgatctttagctgaaacaattttt |
19754904 |
T |
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| Q |
480 |
ggccaaaatttacttatctctcagcaaactttggattactatagttcat |
528 |
Q |
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| T |
19754903 |
ggccaaaacttacttatctctcggcaaactttggattactatagttcat |
19754855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 19755369 - 19755129
Alignment:
| Q |
1 |
tatcatcctattacatttgtctgctattcatctttcattctaaattattccagaatgatatttgatttttgnnnnnnnnnntgttgcaattatcatgaac |
100 |
Q |
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| T |
19755369 |
tatcatcctattacatttgtctactattcatctttcattctaaattattccagaatgatatttgatttttgaaaaaaaaaatgttgcaattatcatgaac |
19755270 |
T |
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| Q |
101 |
catttttt-cccttgaaaatttgacagattgacagtaggtgtgacgtctatccttttgctcagtttcgttcggcatataaagaagcaatcaaatatggtg |
199 |
Q |
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| T |
19755269 |
catttttttcccttgaaaatctgacagattgacagtaggtgtgacggttatccttttgctcagtttcgttcggcatataaagaagcaatcaaatatagtg |
19755170 |
T |
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| Q |
200 |
gcatagtggtacttggtgatcgccgtttagaggttagaata |
240 |
Q |
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| T |
19755169 |
gcatagtggtacttggtgatcgccgtttagaggttagaata |
19755129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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