View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0692_low_5 (Length: 486)
Name: NF0692_low_5
Description: NF0692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0692_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 2 - 457
Target Start/End: Original strand, 4721608 - 4722064
Alignment:
| Q |
2 |
tcaattacaaaatattaacattagatatgatgtattcatatagataaggaattatgatcaaagcattcttcacgataggtagttttcatctatgcatcaa |
101 |
Q |
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| T |
4721608 |
tcaattacaaaatattaacattagatatgatgtattcatctagataaggaattatgatcaaagcattcttcacgataagttgttttcatctatgcatcaa |
4721707 |
T |
|
| Q |
102 |
ataccatgtgatcgaaattggaagcaaaacgtagaatatgaggatcttgattcttaattgcattcaaatgatatatgttcttcttttaacgtggtcctat |
201 |
Q |
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| T |
4721708 |
ataccatgtgatcgaaattggaagcaaaacgtagaatatgaggatcttgattcttaattgcattcgaatgatatatgttcttcttttaacatggtcttat |
4721807 |
T |
|
| Q |
202 |
cttcaacaaatgatacccgaatttcggcaactctggaaactcttcgttctgaaagctcaacttgagtaaaggctactggtgtacctttttcctctagtga |
301 |
Q |
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| T |
4721808 |
cttcaacaaatgatacccgaatttcggcaactctggaaactcttcgttctgaaagctcaacttgagtaaaggctactggtgtacctttttcctctagtga |
4721907 |
T |
|
| Q |
302 |
ggaaagaagactttcttcctctaagcttctcttgt-gttgtcacccaaattatttgagccttgaaacaatggccccattaaaatatatgatgttgttgtc |
400 |
Q |
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| T |
4721908 |
ggaaagaagactttcttcctctaagcttctcttgtcgttgtcacccaaattatttgagccttgaaacaatggccccattaaagtatatgatgttgttgtc |
4722007 |
T |
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| Q |
401 |
cctaacgacaatcattttcctaaaatcagacaatatgtggtcatactatgtttttta |
457 |
Q |
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| T |
4722008 |
cctaacgacaatcgttttcctaaaatcagacaatatgttgtcatactatgtttttta |
4722064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 133 - 425
Target Start/End: Original strand, 54923707 - 54923999
Alignment:
| Q |
133 |
tagaatatgaggatcttgattcttaattgcattcaaatgatatatgttcttcttttaacgtggtcctatcttcaacaaatgatacccgaatttcggcaac |
232 |
Q |
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||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||||||| || ||||||| | |||| ||||| |
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| T |
54923707 |
tagaagatgaggatcttgattcttaattgtcttcgaataatatatgttcttcttttaatgtggtcctatcttcaataacagatacccaactttctgcaac |
54923806 |
T |
|
| Q |
233 |
tctggaaactcttcgttctgaaagctcaacttgagtaaaggctactggtgtacctttttcctctagtgaggaaagaagactttcttcctctaagcttctc |
332 |
Q |
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| T |
54923807 |
tctggtaactcttccttctgagagctcaactaaagtaaaggctcttgctgtaccttctgccactagtgaggacataggactttcaacctttaagcttctc |
54923906 |
T |
|
| Q |
333 |
ttgt-gttgtcacccaaattatttgagccttgaaacaatggccccattaaaatatatgatgttgttgtccctaacgacaatcattttcctaaaa |
425 |
Q |
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| T |
54923907 |
ttgtcctcgtcgctcaaact-tttgaccctaggaacaatggccccattcaagtatatgacgttgtcgtccccaatgacaatcattttcctaaaa |
54923999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 54916016 - 54916066
Alignment:
| Q |
159 |
ttgcattcaaatgatatatgttcttcttttaacgtggtcctatcttcaaca |
209 |
Q |
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| T |
54916016 |
ttgccttcaaataatacatgttcttcttttaaggtggtcctgtcttcaaca |
54916066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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