View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0692_low_6 (Length: 424)
Name: NF0692_low_6
Description: NF0692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0692_low_6 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 424
Target Start/End: Original strand, 8436538 - 8436948
Alignment:
| Q |
14 |
aggcagtggaaacatttttggcctgtggtttgtgacataatagtcatgatcattctcttcgtatgtgtcggtatggtcagacatagttcaactttttcta |
113 |
Q |
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| T |
8436538 |
aggcagtggaaacatttttggcctgtggtatgtgacataatagtcatgatcattctcttcggatgtgtcggtatggtcagacatagttcaactttttcta |
8436637 |
T |
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| Q |
114 |
accaaggaggtccttttgttggtaacaatagcttaatcatcaaccaggaacttggattaaaatttaataatctctactctgatgaagaaacaagaaacaa |
213 |
Q |
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| T |
8436638 |
accaaggaggtccttttgttggtaacaatagcttaatcatcaaccagaaacttggattaaaatttaataatctctactctgatgaagaaacaagaaacaa |
8436737 |
T |
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| Q |
214 |
aagaaaaccaaaaataatattttaaagaaccaaccatcaacgatactacagtactaaagctgataaatttattttgctttaacacaatgaactgagaacc |
313 |
Q |
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| T |
8436738 |
aagaaaaccaaaaataatattttaaaaaaccaaccatcaacgatactacagtactaaagctgataaatttattttgtttgaacacaatgaactgggaacc |
8436837 |
T |
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| Q |
314 |
atactataagtgaaaagattggtataaataacacaaaccagctttcaggcaaattttataccaaagatctattcacctacagtgcagtactcgccattat |
413 |
Q |
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| T |
8436838 |
atactataagtgaaaagattggtataaataacataaaccagctttgaggcaagttttaaaccaaagatctattcacctacagtgcagtcctcgccattat |
8436937 |
T |
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| Q |
414 |
gacattcactc |
424 |
Q |
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| T |
8436938 |
gacattcactc |
8436948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 372
Target Start/End: Original strand, 8447323 - 8447462
Alignment:
| Q |
233 |
ttttaaagaaccaaccatcaacgatactacagtactaaagctgataaatttat-tttgctttaacacaatgaactgagaaccatactataagtgaaaaga |
331 |
Q |
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| T |
8447323 |
ttttatagaaccaaccatcaacaacactgcagtactacagttgataaatttatattttgtataacaaaatgaactgggaaccatactataagtgacatcg |
8447422 |
T |
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| Q |
332 |
ttggtataaataacacaaaccagctttcaggcaaattttat |
372 |
Q |
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|| | ||||| |||| |||||||||| ||||| |||||||| |
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| T |
8447423 |
ttaggataaa-aacaaaaaccagcttccaggccaattttat |
8447462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 8350551 - 8350600
Alignment:
| Q |
66 |
ttctcttcgtatgtgtcggtatggtcagacatagttcaactttttctaac |
115 |
Q |
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| T |
8350551 |
ttctcttcaaatgtgtcggtatggtcagacgtagttcaactttttctaac |
8350600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 8480325 - 8480260
Alignment:
| Q |
117 |
aaggaggtccttttgttggtaacaatagcttaat-catcaaccaggaacttggattaaaatttaat |
181 |
Q |
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| T |
8480325 |
aaggaggtccttttgttggtaacagcagcttaatgcatcaaccaagaaattcgatgaaaatttaat |
8480260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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