View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0692_low_7 (Length: 420)

Name: NF0692_low_7
Description: NF0692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0692_low_7
NF0692_low_7
[»] chr2 (3 HSPs)
chr2 (52-387)||(31481015-31481350)
chr2 (176-226)||(24479593-24479643)
chr2 (262-310)||(7702743-7702791)
[»] chr8 (2 HSPs)
chr8 (172-250)||(5001101-5001179)
chr8 (172-229)||(6223812-6223872)
[»] chr4 (7 HSPs)
chr4 (175-250)||(21318106-21318181)
chr4 (193-250)||(21317880-21317937)
chr4 (193-250)||(21317993-21318050)
chr4 (254-310)||(37750723-37750779)
chr4 (181-247)||(24558665-24558731)
chr4 (261-310)||(21317785-21317834)
chr4 (205-250)||(48465697-48465742)
[»] chr6 (6 HSPs)
chr6 (172-250)||(30129295-30129372)
chr6 (59-127)||(30129229-30129295)
chr6 (66-119)||(1943095-1943148)
chr6 (257-310)||(30129428-30129481)
chr6 (177-229)||(34375266-34375319)
chr6 (184-228)||(1942989-1943033)
[»] chr1 (5 HSPs)
chr1 (184-250)||(28637778-28637844)
chr1 (187-244)||(17113364-17113421)
chr1 (254-310)||(18308460-18308516)
chr1 (262-310)||(39367881-39367929)
chr1 (179-229)||(39367758-39367811)
[»] chr3 (2 HSPs)
chr3 (185-229)||(35083428-35083472)
chr3 (257-309)||(35083276-35083328)
[»] chr5 (4 HSPs)
chr5 (173-252)||(42076473-42076556)
chr5 (257-308)||(10869967-10870018)
chr5 (262-310)||(38449722-38449770)
chr5 (254-293)||(31571344-31571383)
[»] scaffold0002 (1 HSPs)
scaffold0002 (175-246)||(445912-445983)
[»] chr7 (2 HSPs)
chr7 (56-129)||(8248550-8248623)
chr7 (254-305)||(26608297-26608348)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 52 - 387
Target Start/End: Complemental strand, 31481350 - 31481015
Alignment:
Q  52 gcttcaagtgaagctaataaagatggtgttgcaaccttgttaaacaattgaaattacaatcaagaagatttttgttgcgttatctcgcttagatcgcctt 151  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  31481350 gcttaaagtgaagctaataaagatggtgttgcaaccttgttaaacaattgaaattacaatcaagaagatttttgttgcgttatcttgcttatatcgcctt 31481251  T
Q  152 atggctagtgnnnnnnnnncttgaaaattttggtggaaaaagtgattagtaagtttagttaggatatcttatttcattatcttgttattcaaaattgtta 251  Q
    ||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31481250 atggctagtgtttttttttcttgaaaattttggtggaaaaagtgattagtaagtttagttaggatatcttatttcattatcttgttattcaaaattgttg 31481151  T
Q  252 aagtaatttttagattcaatgtggtggattgactacaaaaaatcctataaataatccacnnnnnnnaatctacttcaatcaataacatcttttgataaat 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||||| ||    
T  31481150 aagtaatttttagattcaatgtggtggattgactacaaaaaatcctataaataatccactttttttaatctacttcaatcagtaacatcttttgatagat 31481051  T
Q  352 tcacaannnnnnnagactaaacaactttgggacaca 387  Q
    ||||||       |||||||||||||||||||||||    
T  31481050 tcacaatttttttagactaaacaactttgggacaca 31481015  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 24479643 - 24479593
Alignment:
Q  176 aaattttggtggaaaaagtgattagtaagtttagttaggatatcttatttc 226  Q
    |||||||||||||||||||||||  || | |||||||||||||||||||||    
T  24479643 aaattttggtggaaaaagtgatttctaggcttagttaggatatcttatttc 24479593  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 7702791 - 7702743
Alignment:
Q  262 tagattcaatgtggtggattgactacaaaaaatcctataaataatccac 310  Q
    ||||||||||||||| |||||| |||||||| ||||||  |||||||||    
T  7702791 tagattcaatgtggtagattgagtacaaaaactcctattgataatccac 7702743  T

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Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 5001179 - 5001101
Alignment:
Q  172 ttgaaaattttggtggaaaaagtgattagtaagtttagttaggatatcttatttcattatcttgttattcaaaattgtt 250  Q
    |||||||||||| |||||||||||||||||| ||||||||| | |||||||||||||||||||||||| ||||||||||    
T  5001179 ttgaaaattttgatggaaaaagtgattagtaggtttagttaaggtatcttatttcattatcttgttatccaaaattgtt 5001101  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 6223872 - 6223812
Alignment:
Q  172 ttgaaaattttggtggaaaaagtgattagtaa---gtttagttaggatatcttatttcatt 229  Q
    |||||| ||||||| ||||||||||||| ||    ||||||||||||||||||||||||||    
T  6223872 ttgaaatttttggtagaaaaagtgattattactgggtttagttaggatatcttatttcatt 6223812  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 21318181 - 21318106
Alignment:
Q  175 aaaattttggtggaaaaagtgattagtaagtttagttaggatatcttatttcattatcttgttattcaaaattgtt 250  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||| ||| ||||||||||| ||||||||    
T  21318181 aaaattttggtggaataagtgattagtaggtttagttaggatatcttattttattgtcttgttattcgaaattgtt 21318106  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 21317937 - 21317880
Alignment:
Q  193 gtgattagtaagtttagttaggatatcttatttcattatcttgttattcaaaattgtt 250  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||    
T  21317937 gtgattagtaggtttagttaggatatcttatttcattgtcttgttattcgaaattgtt 21317880  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 21318050 - 21317993
Alignment:
Q  193 gtgattagtaagtttagttaggatatcttatttcattatcttgttattcaaaattgtt 250  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||    
T  21318050 gtgattagtaggtttagttaggatatcttatttcattgtcttgttattcgaaattgtt 21317993  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 37750723 - 37750779
Alignment:
Q  254 gtaatttttagattcaatgtggtggattgactacaaaaaatcctataaataatccac 310  Q
    ||||| |||||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  37750723 gtaatctttagattcaatgtggtggattgagtacaaaaactcctatagataatccac 37750779  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 24558665 - 24558731
Alignment:
Q  181 ttggtggaaaaagtgattagtaagtttagttaggatatcttatttcattatcttgttattcaaaatt 247  Q
    |||||||||||| |||||| ||  |||||||||||||||| |||||||| ||||||||| |||||||    
T  24558665 ttggtggaaaaaatgattattagatttagttaggatatctaatttcattgtcttgttatccaaaatt 24558731  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 21317834 - 21317785
Alignment:
Q  261 ttagattcaatgtggtggattgactacaaaaaatcctataaataatccac 310  Q
    ||||||||| ||||||||||||||||||||||  |||||| |||||||||    
T  21317834 ttagattcagtgtggtggattgactacaaaaacacctatacataatccac 21317785  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 48465742 - 48465697
Alignment:
Q  205 tttagttaggatatcttatttcattatcttgttattcaaaattgtt 250  Q
    ||||||||||||||||||| || || ||||||||| ||||||||||    
T  48465742 tttagttaggatatcttatatctttgtcttgttatccaaaattgtt 48465697  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 30129295 - 30129372
Alignment:
Q  172 ttgaaaattttggtggaaaaagtgattagtaagtttagttaggatatcttatttcattatcttgttattcaaaattgtt 250  Q
    |||||||||||| |||||||| | ||||||| |||| ||||||||||||||||||||| |||||||||  |||||||||    
T  30129295 ttgaaaattttg-tggaaaaaattattagtaggtttggttaggatatcttatttcattttcttgttataaaaaattgtt 30129372  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 30129229 - 30129295
Alignment:
Q  59 gtgaagctaataaagatggtgttgcaaccttgttaaacaattgaaattacaatcaagaagatttttgtt 127  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||||| ||||| ||  ||||||||||||    
T  30129229 gtgaagctattaaagatggtgttgcaagcttgtcaaacaattgaaagtacaacca--aagatttttgtt 30129295  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 1943148 - 1943095
Alignment:
Q  66 taataaagatggtgttgcaaccttgttaaacaattgaaattacaatcaagaaga 119  Q
    |||| ||||||||||||||| ||| | |||||||||||| ||||| ||||||||    
T  1943148 taattaagatggtgttgcaaacttatcaaacaattgaaagtacaaccaagaaga 1943095  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 30129428 - 30129481
Alignment:
Q  257 atttttagattcaatgtggtggattgactacaaaaaatcctataaataatccac 310  Q
    |||| ||||||||||||| |||||||||||||||||  | |||| |||||||||    
T  30129428 atttctagattcaatgtgatggattgactacaaaaacacttatagataatccac 30129481  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 34375319 - 34375266
Alignment:
Q  177 aattttggtggaaaaagtgatt-agtaagtttagttaggatatcttatttcatt 229  Q
    |||||||||| ||||||||||| | ||  |||||||||||||||||||||||||    
T  34375319 aattttggtgaaaaaagtgatttactagatttagttaggatatcttatttcatt 34375266  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 1943033 - 1942989
Alignment:
Q  184 gtggaaaaagtgattagtaagtttagttaggatatcttatttcat 228  Q
    |||||||||||||| | || |||||||||||| ||||||||||||    
T  1943033 gtggaaaaagtgataaataggtttagttaggacatcttatttcat 1942989  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 28637844 - 28637778
Alignment:
Q  184 gtggaaaaagtgattagtaagtttagttaggatatcttatttcattatcttgttattcaaaattgtt 250  Q
    ||||||||||||||||||| |||||||||||| ||| ||||| ||| ||||||||| ||||||||||    
T  28637844 gtggaaaaagtgattagtatgtttagttaggaaatcctattttattgtcttgttatccaaaattgtt 28637778  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 17113421 - 17113364
Alignment:
Q  187 gaaaaagtgattagtaagtttagttaggatatcttatttcattatcttgttattcaaa 244  Q
    ||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||||    
T  17113421 gaaaaagtgattactaggtttagttaggatatcttatttcattgtcttgttatccaaa 17113364  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 18308516 - 18308460
Alignment:
Q  254 gtaatttttagattcaatgtggtggattgactacaaaaaatcctataaataatccac 310  Q
    ||||||| |||||||||||||||||||||| ||||| |  ||||||| |||||||||    
T  18308516 gtaatttctagattcaatgtggtggattgagtacaacagctcctatagataatccac 18308460  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 39367881 - 39367929
Alignment:
Q  262 tagattcaatgtggtggattgactacaaaaaatcctataaataatccac 310  Q
    |||||||||||||||||||||| || ||||| ||||||| |||||||||    
T  39367881 tagattcaatgtggtggattgagtaaaaaaactcctatagataatccac 39367929  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 39367758 - 39367811
Alignment:
Q  179 ttttggtggaaaaagtgatt---agtaagtttagttaggatatcttatttcatt 229  Q
    ||||||||||||||||||||   | || ||||||||||||||||||||||||||    
T  39367758 ttttggtggaaaaagtgattgttactaggtttagttaggatatcttatttcatt 39367811  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 35083472 - 35083428
Alignment:
Q  185 tggaaaaagtgattagtaagtttagttaggatatcttatttcatt 229  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  35083472 tggaaaaagtgattaataagtttagttaggatatcttatttcatt 35083428  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 35083328 - 35083276
Alignment:
Q  257 atttttagattcaatgtggtggattgactacaaaaaatcctataaataatcca 309  Q
    |||| |||||||||||||||||||||| |||||||| || |||| ||||||||    
T  35083328 atttctagattcaatgtggtggattgagtacaaaaactcttatacataatcca 35083276  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 42076556 - 42076473
Alignment:
Q  173 tgaaaattttggtggaaaaagtgattagtaagt----ttagttaggatatcttatttcattatcttgttattcaaaattgttaa 252  Q
    ||||| |||| |||||||||||| ||||| |||    |||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  42076556 tgaaacttttagtggaaaaagtggttagttagtagatttagttaggatatcttatatcattgtcttgttatccaaaattgttaa 42076473  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 308
Target Start/End: Complemental strand, 10870018 - 10869967
Alignment:
Q  257 atttttagattcaatgtggtggattgactacaaaaaatcctataaataatcc 308  Q
    |||| ||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  10870018 atttctagattcaatgtggtggatagactacaaaaactcctatagataatcc 10869967  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 38449722 - 38449770
Alignment:
Q  262 tagattcaatgtggtggattgactacaaaaaatcctataaataatccac 310  Q
    ||||||||||||||| |||||| |||||||| ||||||| |||||||||    
T  38449722 tagattcaatgtggtagattgagtacaaaaactcctatagataatccac 38449770  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 31571383 - 31571344
Alignment:
Q  254 gtaatttttagattcaatgtggtggattgactacaaaaaa 293  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  31571383 gtaatttctagattcaatgtggtggattgagtacaaaaaa 31571344  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 445912 - 445983
Alignment:
Q  175 aaaattttggtggaaaaagtgattagtaagtttagttaggatatcttatttcattatcttgttattcaaaat 246  Q
    |||||||| ||||||||||||||| ||| |||||||| ||||||||| ||| ||| | ||||||| ||||||    
T  445912 aaaatttttgtggaaaaagtgattcgtaggtttagtttggatatctttttttattgttttgttatccaaaat 445983  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 8248623 - 8248550
Alignment:
Q  56 caagtgaagctaataaagatggtgttgcaaccttgttaaacaattgaaattacaatcaagaagatttttgttgc 129  Q
    |||||||||||| |||||||| | |||||| ||||| ||||| |||||| ||||| |||||||| || ||||||    
T  8248623 caagtgaagctattaaagatgttattgcaaacttgtcaaacagttgaaagtacaaccaagaagaattatgttgc 8248550  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 26608297 - 26608348
Alignment:
Q  254 gtaatttttagattcaatgtggtggattgactacaaaaaatcctataaataa 305  Q
    |||||||||||||||||||||||||||||| || ||||| | ||||| ||||    
T  26608297 gtaatttttagattcaatgtggtggattgagtaaaaaaactgctatagataa 26608348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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