View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0692_low_8 (Length: 409)
Name: NF0692_low_8
Description: NF0692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0692_low_8 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 77 - 409
Target Start/End: Original strand, 29990882 - 29991214
Alignment:
| Q |
77 |
aaatggtcgcactgagagaaagcatcatcacattcttgactcagtctgtgtcatgctaatctcggcctcttgtctagaacgtgcttggggtgaagctgct |
176 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29990882 |
aaatggtcgcgctgagagaaagcatcattacattcttgactcagtctgtgtcatgcttatctcggcctcttgtccagaacgtgcttggggtgaagctgct |
29990981 |
T |
|
| Q |
177 |
cttactgctgtccatacaatcaatcgtctcccttcttatgtccttggtaatgtctctccttttgagcgtctttatctcactacaccaaattataaatcac |
276 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29990982 |
cttactgctgtccatataatcaatcatctcccttattatgtccttggtaatgtctctccttttgagcgtctttatctcactacaccagattataaatcac |
29991081 |
T |
|
| Q |
277 |
ttaaggtgtttggttgtgcgtgttttgtcctccttcagccccatgaatatagtaaacttgagcctcgtgctcgtctgtgttgttttcttggttatggcac |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29991082 |
ttaaggtgtttggttgtgcgtgttttgtcctccttcagccccatgaatatagtaaacttgagcctcgtgctcgtctgtgttgttttcttggttatgacac |
29991181 |
T |
|
| Q |
377 |
taaacacaaaggttatcgatgttgggatccaat |
409 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |
|
|
| T |
29991182 |
tgaacacaaaggttatcgatgttgggatccaat |
29991214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 78 - 403
Target Start/End: Original strand, 16502922 - 16503247
Alignment:
| Q |
78 |
aatggtcgcactgagagaaagcatcatcacattcttgactcagtctgtgtcatgctaatctcggcctcttgtctagaacgtgcttggggtgaagctgctc |
177 |
Q |
| |
|
||||||||| ||||||||||||||| | ||||||||||||||||||||| ||||| ||||| ||||| ||| |||||| |||||||||||||| |||| |
|
|
| T |
16502922 |
aatggtcgcgctgagagaaagcatcgttacattcttgactcagtctgtgccatgcatatctcagcctcatgttcagaacgcgcttggggtgaagccgctc |
16503021 |
T |
|
| Q |
178 |
ttactgctgtccatacaatcaatcgtctcccttcttatgtccttggtaatgtctctccttttgagcgtctttatctcactacaccaaattataaatcact |
277 |
Q |
| |
|
|||| |||||||||| ||||||||| ||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||| |
|
|
| T |
16503022 |
ttaccgctgtccatataatcaatcgcctctcttcctctgtccttggtaatgtctctccttttgagcgtctttatttcactacacaagattataactcact |
16503121 |
T |
|
| Q |
278 |
taaggtgtttggttgtgcgtgttttgtcctccttcagccccatgaatatagtaaacttgagcctcgtgctcgtctgtgttgttttcttggttatggcact |
377 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| |||| || |||| ||||||| ||| | || ||||| |||||||||||||||||||||| ||| |
|
|
| T |
16503122 |
taaggtgtttggttgtgcttgttttgtccttcttcagacccaagagtatactaaactttagcatggtactcgtttgtgttgttttcttggttatggtact |
16503221 |
T |
|
| Q |
378 |
aaacacaaaggttatcgatgttggga |
403 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
16503222 |
gaacacaaaggtcatcgatgttggga |
16503247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 77 - 406
Target Start/End: Original strand, 24432025 - 24432354
Alignment:
| Q |
77 |
aaatggtcgcactgagagaaagcatcatcacattcttgactcagtctgtgtcatgctaatctcggcctcttgtctagaacgtgcttggggtgaagctgct |
176 |
Q |
| |
|
||||||||| |||||||||| |||| |||||||||||||| ||| ||| |||||| ||||| |||||||||| ||||||||||||||||||||| || |
|
|
| T |
24432025 |
aaatggtcgtgctgagagaaaacatcgtcacattcttgactttgtccgtgccatgcttatctcagcctcttgtcctgaacgtgcttggggtgaagcttct |
24432124 |
T |
|
| Q |
177 |
cttactgctgtccatacaatcaatcgtctcccttcttatgtccttggtaatgtctctccttttgagcgtctttatctcactacaccaaattataaatcac |
276 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||| | | || |||||||| |||||||||||||||||||||| | |||||||| ||||||| | || |
|
|
| T |
24432125 |
cttactgctgtccacattatcaatcgtcttccttcatctatctttggtaatatctctccttttgagcgtctttaccatactacacctgattataatttac |
24432224 |
T |
|
| Q |
277 |
ttaaggtgtttggttgtgcgtgttttgtcctccttcagccccatgaatatagtaaacttgagcctcgtgctcgtctgtgttgttttcttggttatggcac |
376 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || ||||| ||| ||| |||||||||||||||||| ||||| |||||||||||||||||||| | |
|
|
| T |
24432225 |
ttaaggtgtttggttgtgcttgttttgtcctcctccaaccccacgaacatactaaacttgagcctcgtgcccgtctttgttgttttcttggttatggtat |
24432324 |
T |
|
| Q |
377 |
taaacacaaaggttatcgatgttgggatcc |
406 |
Q |
| |
|
| |||| ||||||||||||||||||||||| |
|
|
| T |
24432325 |
tgaacataaaggttatcgatgttgggatcc |
24432354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 29990163 - 29990214
Alignment:
| Q |
1 |
ctcacgagtcaaccatttgtgtcgctaccacacagtcttccattcaactttg |
52 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| ||||||||||||||||||| |
|
|
| T |
29990163 |
ctcacgagtcaaccatttgtgccgctatcacatagtcttccattcaactttg |
29990214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 77 - 409
Target Start/End: Complemental strand, 53017292 - 53016960
Alignment:
| Q |
77 |
aaatggtcgcactgagagaaagcatcatcacattcttgactcagtctgtgtcatgctaatctcggcctcttgtctagaacgtgcttggggtgaagctgct |
176 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||| ||||| ||||| |||| ||||| ||||||| |||||| ||| |
|
|
| T |
53017292 |
aaatggtcgtgctgagagaaagcatcgtcacattcttgactcagtccgtgccatgcttatctcagcctcgtgtccagaacacgcttgggatgaagccgct |
53017193 |
T |
|
| Q |
177 |
cttactgctgtccatacaatcaatcgtctcccttcttatgtccttggtaatgtctctccttttgagcgtctttatctcactacaccaaattataaatcac |
276 |
Q |
| |
|
||||| || ||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
53017192 |
cttaccgcagtccatataatcaatcgtctcccttcctctgtccttggtaatgtctctccttttgagcgtctttatctcactacaccaaattataactcac |
53017093 |
T |
|
| Q |
277 |
ttaaggtgtttggttgtgcgtgttttgtcctccttcagccccatgaatatagtaaacttgagcctcgtgctcgtctgtgttgttttcttggttatggcac |
376 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||| | || |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
53017092 |
ttaaggtgtttggttgtgcttgttttgtcctccttcaaccccatgagtttactaaacttgagcctcatgctcgtctgtgttgttttcttggttatggcac |
53016993 |
T |
|
| Q |
377 |
taaacacaaaggttatcgatgttgggatccaat |
409 |
Q |
| |
|
| |||||||||| |||||||||| ||||||||| |
|
|
| T |
53016992 |
ttaacacaaaggctatcgatgttaggatccaat |
53016960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 135 - 409
Target Start/End: Complemental strand, 5241961 - 5241687
Alignment:
| Q |
135 |
atctcggcctcttgtctagaacgtgcttggggtgaagctgctcttactgctgtccatacaatcaatcgtctcccttcttatgtccttggtaatgtctctc |
234 |
Q |
| |
|
||||| |||||||||| | |||| ||||||||||||||||||||||| |||||||||| || || |||||||||| ||| ||||||| ||||||| |
|
|
| T |
5241961 |
atctcagcctcttgtccaaaacgcgcttggggtgaagctgctcttaccgctgtccatatgataaactgtctcccttccgctgtatttggtaacgtctctc |
5241862 |
T |
|
| Q |
235 |
cttttgagcgtctttatctcactacaccaaattataaatcacttaaggtgtttggttgtgcgtgttttgtcctccttcagccccatgaatatagtaaact |
334 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
5241861 |
cttttgagcatctttatctcactacaccagattataaatcactcaaggtgtttggttgtgcttgttttgtcctccttcagccccatgagtatactaaact |
5241762 |
T |
|
| Q |
335 |
tgagcctcgtgctcgtctgtgttgttttcttggttatggcactaaacacaaaggttatcgatgttgggatccaat |
409 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5241761 |
tgagcctcgtgctcgtctgtgtcgttttcttggttatggaactaaacacaaaggttatcgatgttgggatccaat |
5241687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 77 - 406
Target Start/End: Original strand, 17451074 - 17451403
Alignment:
| Q |
77 |
aaatggtcgcactgagagaaagcatcatcacattcttgactcagtctgtgtcatgctaatctcggcctcttgtctagaacgtgcttggggtgaagctgct |
176 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||||||||||| ||| ||| |||||| ||||| |||||||||| ||||||||||||||||||||| || |
|
|
| T |
17451074 |
aaatggtcgtgctgagagaaaacatcgtcacattcttgactctgtccgtgccatgcttatctcagcctcttgtcctgaacgtgcttggggtgaagcttct |
17451173 |
T |
|
| Q |
177 |
cttactgctgtccatacaatcaatcgtctcccttcttatgtccttggtaatgtctctccttttgagcgtctttatctcactacaccaaattataaatcac |
276 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||| | | || |||||||| |||||||||||||||||||||| | |||||||| ||||||| | || |
|
|
| T |
17451174 |
cttactgctgtccacattatcaatcgtcttccttcatctatctttggtaatatctctccttttgagcgtctttaccatactacacctgattataatttac |
17451273 |
T |
|
| Q |
277 |
ttaaggtgtttggttgtgcgtgttttgtcctccttcagccccatgaatatagtaaacttgagcctcgtgctcgtctgtgttgttttcttggttatggcac |
376 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || ||||| ||| ||| |||||||||||||||||| ||||| |||||||||||||||||||| | |
|
|
| T |
17451274 |
ttaaggtgtttggttgtgcttgttttgtcctcctccaaccccacgaacatactaaacttgagcctcgtgcccgtctttgttgttttcttggttatggtat |
17451373 |
T |
|
| Q |
377 |
taaacacaaaggttatcgatgttgggatcc |
406 |
Q |
| |
|
| |||| ||||||||||||||||||||||| |
|
|
| T |
17451374 |
tgaacataaaggttatcgatgttgggatcc |
17451403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 77 - 403
Target Start/End: Original strand, 14825789 - 14826123
Alignment:
| Q |
77 |
aaatggtcgcactgagagaaagcatcatcacattcttgactcagtctgtgtcatgctaatctcggcctcttgtctagaacgtgcttggggtgaagctgct |
176 |
Q |
| |
|
||||||||| ||||||||||||||| || ||||||||| || || ||| |||||| ||||| |||||||||| |||||||||||| ||||||| | |
|
|
| T |
14825789 |
aaatggtcgtgctgagagaaagcatcgtcccattcttgattctgttcgtgccatgcttatctcagcctcttgtcctgaacgtgcttggtgtgaagcatgt |
14825888 |
T |
|
| Q |
177 |
cttactgctgtccatacaatcaatcgtctcccttcttatgtccttggtaatgtctctccttttgagcgtctttatc--------tcactacaccaaatta |
268 |
Q |
| |
|
|| |||| |||||| | || |||||||| || || | |||||||||||||||||| || ||||||||||| |||| |||||||||| |||| |
|
|
| T |
14825889 |
ctaactgttgtccacattattaatcgtcttccctcatctgtccttggtaatgtctcaccctttgagcgtctatatcacactacaccactacaccagatta |
14825988 |
T |
|
| Q |
269 |
taaatcacttaaggtgtttggttgtgcgtgttttgtcctccttcagccccatgaatatagtaaacttgagcctcgtgctcgtctgtgttgttttcttggt |
368 |
Q |
| |
|
|| |||||||||||||||| |||||| |||||||| || || || || ||||||||| |||||| ||||| ||||| | ||| ||||||||||| ||| |
|
|
| T |
14825989 |
caattcacttaaggtgtttgattgtgcttgttttgttcttctccaatcctatgaatatactaaactagagccacgtgcccatctctgttgttttctaggt |
14826088 |
T |
|
| Q |
369 |
tatggcactaaacacaaaggttatcgatgttggga |
403 |
Q |
| |
|
||||| | | |||||||||||| ||||||||||| |
|
|
| T |
14826089 |
tatggaaatgaacacaaaggtttccgatgttggga |
14826123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 93 - 409
Target Start/End: Complemental strand, 20670207 - 20669890
Alignment:
| Q |
93 |
agaaagcatcatcacattcttgactcagtctgtgtcatgctaatctcggcctcttgtctagaacgtgcttgggg-tgaagctgctcttactgctgtccat |
191 |
Q |
| |
|
|||||||||| |||||||||||||||| | |||||||||| ||| | |||||||||| ||||||||||||||| ||||| |||||||||| || ||||| |
|
|
| T |
20670207 |
agaaagcatcgtcacattcttgactcaattcgtgtcatgcttatcccagcctcttgtccagaacgtgcttgggggtgaagatgctcttactactatccat |
20670108 |
T |
|
| Q |
192 |
acaatcaatcgtctcccttcttatgtccttggtaatgtctctccttttgagcgtctttatctcactacaccaaattataaatcacttaaggtgtttggtt |
291 |
Q |
| |
|
| ||||||| |||||||||| | ||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
20670107 |
ataatcaattgtctcccttcctctgtccttggtaatgtctctccctttgagaaactttatctcactacaccggattataaatcacttaaggtgttttgtt |
20670008 |
T |
|
| Q |
292 |
gtgcgtgttttgtcctccttcagccccatgaatatagtaaacttgagcctcgtgctcgtctgtgttgttttcttggttatggcactaaacacaaaggtta |
391 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||| |||||||| |
|
|
| T |
20670007 |
gtgattgttttgtcctccttcagccgcatgaatatacaaaacttgagcctcgtgctcgtctgtgttattttcttggttatggcattgaacataaaggtta |
20669908 |
T |
|
| Q |
392 |
tcgatgttgggatccaat |
409 |
Q |
| |
|
|| ||||| ||||||||| |
|
|
| T |
20669907 |
tcaatgttaggatccaat |
20669890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 409
Target Start/End: Original strand, 9666251 - 9666308
Alignment:
| Q |
352 |
tgtgttgttttcttggttatggcactaaacacaaaggttatcgatgttgggatccaat |
409 |
Q |
| |
|
||||||| ||||||||||||| || |||||||||| ||||| |||||||||||||| |
|
|
| T |
9666251 |
tgtgttgctttcttggttatgacatggaacacaaaggatatcgttgttgggatccaat |
9666308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 88 - 375
Target Start/End: Original strand, 12544402 - 12544688
Alignment:
| Q |
88 |
ctgagagaaagcatcatcacattcttgactcagtctgtgtcatgctaatctcggcctcttgtctagaacgtgcttggggtgaagctgctcttactgctgt |
187 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||| |||||| || || || ||||||| ||| | || ||| |||||| |||||||||| ||| |
|
|
| T |
12544402 |
ctgagagaaagcatcgtcacattcttgactcagtccgtgccatgcttatttcagcatcttgtccagatcacactaggg-tgaagccgctcttactgttgt |
12544500 |
T |
|
| Q |
188 |
ccatacaatcaatcgtctcccttcttatgtccttggtaatgtctctccttttgagcgtctttatctcactacaccaaattataaatcacttaaggtgttt |
287 |
Q |
| |
|
|||| |||||||| ||||||||| | |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| | | || || |||| |
|
|
| T |
12544501 |
tcatataatcaatcatctcccttcctctgtccttggtaatgtctctccttttgggcggctatatctcactacaccaaattataacttatatatggagttt |
12544600 |
T |
|
| Q |
288 |
ggttgtgcgtgttttgtcctccttcagccccatgaatatagtaaacttgagcctcgtgctcgtctgtgttgttttcttggttatggca |
375 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||||||| ||||||| ||||| || ||| || |||||||||||||||||||||| |
|
|
| T |
12544601 |
ggttgtgattgttttgtcctccttcaaccccaagaatatactaaactttcgcctcatggtcgcctatgttgttttcttggttatggca |
12544688 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 15269183 - 15269245
Alignment:
| Q |
77 |
aaatggtcgcactgagagaaagcatcatcacattcttgactcagtctgtgtcatgctaatctc |
139 |
Q |
| |
|
||||||| || ||||||||||||||| |||| ||||||||| ||| ||||||||||| ||||| |
|
|
| T |
15269183 |
aaatggttgcgctgagagaaagcatcgtcacgttcttgacttagtttgtgtcatgcttatctc |
15269245 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 404
Target Start/End: Original strand, 12618369 - 12618428
Alignment:
| Q |
344 |
tgctcgtctgtgttgttttcttggttatggcactaaacacaaaggttatcgatgttgggat |
404 |
Q |
| |
|
||||||| ||||||| ||||| ||||||||||| ||||||||| | |||| |||||||||| |
|
|
| T |
12618369 |
tgctcgtttgtgttgctttct-ggttatggcacgaaacacaaatgatatcaatgttgggat |
12618428 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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