View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0693_high_1 (Length: 642)
Name: NF0693_high_1
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0693_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 30 - 639
Target Start/End: Original strand, 41859478 - 41860087
Alignment:
| Q |
30 |
cttgtcatgaaacgcataaacgacacagcttccatacgtcgtagatgtgtaaacgacatgctcacatggattgcaaaagaagcacgtgagttagaagctg |
129 |
Q |
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| T |
41859478 |
cttgtcatgaaacgcataaacgacacagcttccatacgtcgtagatgtgtaaacgacatgctcacatggattgcaaaagaagcacgtgagttagaagctg |
41859577 |
T |
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| Q |
130 |
gtcgtggacttcatgtgtcacgttttgtatttttcatgagttttaacttgtttggaaatttaatgttgtcgcgtgatatgtttgatatgaaatctgagag |
229 |
Q |
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| T |
41859578 |
gtcgtggacttcatgtgtcacgttttgtatttttcatgagttttaacttgtttggaaatttaatgttgtcgcgtgatatgtttgatatgaaatctgagag |
41859677 |
T |
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| Q |
230 |
tggttccgagtttttcactgcggttatggggttgttggaatggaccggacatgccaatgtgtcggatttgtttccatggttaaggtggttggatccacaa |
329 |
Q |
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| T |
41859678 |
tggttccgagtttttcactgcggttatggggttgttggaatggaccggacatgccaatgtgtcggatttgtttccatggttaaggtggttggatccacaa |
41859777 |
T |
|
| Q |
330 |
ggtctaaggagaaaaatggacagggatatgggaaaagctattgaaattgcttccacgtttgtgaaagagcgtttggatttggaagtggaacgtgatgaga |
429 |
Q |
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| T |
41859778 |
ggtctaaggagaaaaatggacagggatatgggaaaagctattgaaattgcttccacgtttgtgaaagagcgtttggatttggaagtggaacgtgatgaga |
41859877 |
T |
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| Q |
430 |
aatcaagagatttcttggatgtcttgcttgagttccaaagaaatgagaatcaagatgcagtcaacatctcagataaagatctcaacgttttcatcttggt |
529 |
Q |
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| T |
41859878 |
aatcaagagatttcttggatgtcttgcttgagttccaaagaaatgagaatcaagatgcagtcaacatctcagataaagatctcaacgttttcatcttggt |
41859977 |
T |
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| Q |
530 |
aagtaatttcctccctaaatatagacaattacttatccctttttatataatatatttttctaatccaccatgtttaaaatctttgataggaaaatgatat |
629 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
41859978 |
aagtaatttcctccctaaatatagacaattacttatccctttttatataatatatttttctaatccaccatggttaaaatctttgatacgaaaatgatat |
41860077 |
T |
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| Q |
630 |
tcttcgacat |
639 |
Q |
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| T |
41860078 |
tcttagacat |
41860087 |
T |
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