View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0693_high_19 (Length: 229)
Name: NF0693_high_19
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0693_high_19 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 3208632 - 3208404
Alignment:
| Q |
1 |
tgttagttgttcagctgcaaattcaggtcctttttatggtactttgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208632 |
tgttagttgttcagctgcaaattcaggtcctttttatggtactttgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaa |
3208533 |
T |
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| Q |
101 |
attgaggcagtagctaagcttggcgacgggacagaatatcttggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208532 |
attgaggcagtagctaagcttggcgacgggacagaatatcttggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatg |
3208433 |
T |
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| Q |
201 |
caggttcaattaatacaagtgatgattcc |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3208432 |
caggttcaattaatacaagtgatgattcc |
3208404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 3202658 - 3202432
Alignment:
| Q |
1 |
tgttagttgttcagctgcaaattcaggtcctttttatggtactttgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaa |
100 |
Q |
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|||||||||||| |||| |||||||||||||||| ||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3202658 |
tgttagttgttctgctggaaattcaggtccttttcatggtacattggctaatgaagcaccatggattttaactgttggtgccagcacaattgacagaaaa |
3202559 |
T |
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| Q |
101 |
attgaggcagtagctaagcttggcgacgggacagaatatcttggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatg |
200 |
Q |
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| T |
3202558 |
atagaggcagtagctaagcttggggatgggacggaatatctcggagaatcagttttccaaccaaaagactttgcatcaacattattgccacttgtgtatg |
3202459 |
T |
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| Q |
201 |
caggttcaattaatacaagtgatgatt |
227 |
Q |
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| T |
3202458 |
caggtgcaattaacacaagtgatgatt |
3202432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 3216570 - 3216343
Alignment:
| Q |
2 |
gttagttgttcagctgcaaattcaggtcctttttatggtactttgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaa |
101 |
Q |
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|||||||| ||||||| ||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |
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| T |
3216570 |
gttagttgctcagctggaaattttggtcctgattatggtacaacgtctaatgaagcaccatggattctaactgttggtgctagcacaactgatagaaaaa |
3216471 |
T |
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| Q |
102 |
ttgaggcagtagctaagcttggcgacgggacagaatatcttggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatgc |
201 |
Q |
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| || ||| ||||||| |||||| ||||| | ||||| ||||||||||||| || ||||||||||| |||||||| ||| | ||||||||||||||||| |
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| T |
3216470 |
tagaagcaatagctaaacttggcaacggggaaaaatatattggagaatcagtgtttcaaccaaaagagtttgcatcaacactgttgccacttgtgtatgc |
3216371 |
T |
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| Q |
202 |
aggttcaattaatacaagtgatgattcc |
229 |
Q |
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|||||| |||||| ||||||| ||||| |
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| T |
3216370 |
aggttctgttaatataagtgataattcc |
3216343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 3226476 - 3226373
Alignment:
| Q |
1 |
tgttagttgttcagctgcaaattcaggtcctttttatggtactttgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaa |
100 |
Q |
| |
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||||||||| || |||||||| || |||||| ||| | ||| | || |||||||| || ||||| || ||||||||||| |||||||||||||||||| |
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| T |
3226476 |
tgttagttgctctgctgcaaactctggtcctggatatagcactctctccaatgaagctccttggatcctcactgttggtgctagcacaattgacagaaaa |
3226377 |
T |
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| Q |
101 |
attg |
104 |
Q |
| |
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|||| |
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| T |
3226376 |
attg |
3226373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 3221445 - 3221391
Alignment:
| Q |
50 |
aatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattg |
104 |
Q |
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|||||||| || ||| | || ||||||||||||||||||||||| |||||||||| |
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| T |
3221445 |
aatgaagctccttgggtcctcactgttggtgccagcacaattgatagaaaaattg |
3221391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 3231678 - 3231624
Alignment:
| Q |
50 |
aatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattg |
104 |
Q |
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|||||||| || ||||| || ||||||||||| ||||||||||| |||||||||| |
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| T |
3231678 |
aatgaagctccttggatcctcactgttggtgcaagcacaattgatagaaaaattg |
3231624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 3178363 - 3178415
Alignment:
| Q |
50 |
aatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaat |
102 |
Q |
| |
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|||||||| || ||||| || ||||| ||||| |||||||||||||||||||| |
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| T |
3178363 |
aatgaagctccttggatcctcactgtaggtgcaagcacaattgacagaaaaat |
3178415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 3240477 - 3240425
Alignment:
| Q |
50 |
aatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaat |
102 |
Q |
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|||||||| || ||||| || ||||| ||||| |||||||||||||||||||| |
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| T |
3240477 |
aatgaagctccttggatcctcactgtaggtgcaagcacaattgacagaaaaat |
3240425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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