View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0693_high_2 (Length: 495)
Name: NF0693_high_2
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0693_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 51 - 466
Target Start/End: Complemental strand, 26847368 - 26846955
Alignment:
| Q |
51 |
ccttagatgagaacaaaattgcatagaaattctagataaaaattgtaaatggataagaaaacaaatgatgggagannnnnnnaacagatttttacagaag |
150 |
Q |
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| T |
26847368 |
ccttagatgagaacaaaattgcatagaaattctagataaaaattgtaaacggataagaaaacaaatgatgggagatttttttaacagatttttacagaag |
26847269 |
T |
|
| Q |
151 |
tttattaacgagtgcctctacattgtttgatgaatgaaggactagttgaaggaactttgtatccttcaacagcttttgtatgttgcattttcataacccc |
250 |
Q |
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| T |
26847268 |
tttattaacgagtgcctctacattgtttgatgaatgaaggactagttgaaggaactttgtatccttcaacagcttttgtatgttgcattttcataacccc |
26847169 |
T |
|
| Q |
251 |
atctaaagaatcaatctggggaacattcgaattagcactaagctgagggaatctaacttgagattgtggtacccagtcagacatgtttataacttgaaga |
350 |
Q |
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| T |
26847168 |
atctaaagaatcaatt--gggaacattcgaattagcactaagctgagggaatctaacttgagattgtggtacccagtcagacatgtttataacttgaaga |
26847071 |
T |
|
| Q |
351 |
tcttggttccgttcataataatcctgaaacaataccaaaaaacatatccaacttattttaattaattgagtagaagaaaaatagctagctaggtcttctg |
450 |
Q |
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| T |
26847070 |
tcttggttctgttcataataatcctgaaacaataccaaaaaacatatccaacttattttaattaattgagtagaagaaaaatagctagctaggtcttctg |
26846971 |
T |
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| Q |
451 |
aatactaaaagaaaga |
466 |
Q |
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| T |
26846970 |
aatactaaaagaaaga |
26846955 |
T |
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