View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0693_high_6 (Length: 363)
Name: NF0693_high_6
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0693_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 30 - 353
Target Start/End: Complemental strand, 2339489 - 2339166
Alignment:
| Q |
30 |
ctaatgtgcccactattccacatacaattgtaattcctccaaataccaaatctgaatcagtctgccaaaataagccaagtttaatatgacaacagcatca |
129 |
Q |
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| T |
2339489 |
ctaatgtgcccactattccacatacaattgtaattcctccaaataccaaatctgaatcagtctgccaaaataagccaagtttaatatgacaacagcatca |
2339390 |
T |
|
| Q |
130 |
tcatacttttttatattgaaagtatcttgcttaccagaatgccaaacgtgttttattttatacaagaaacgagatatataagaatgaacaaccatgagat |
229 |
Q |
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| T |
2339389 |
tcatacttttttatattgaaagtatcttgcttaccagaatgccaaacatgttttattttatacaagaaacgagatatataagaatgaacaaccatgagat |
2339290 |
T |
|
| Q |
230 |
agtaaaggtatattaatgcataagggatcattggctgaagcaaaacctcaccatgttataaatattgtagatagctttgggaccccaatacgagtaagca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2339289 |
agtaaaggtatattaatgcataagggatcattggctgaagcaaaacctcaccatgttataaatattgtagatagctttgggaccccaatacgagtaagca |
2339190 |
T |
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| Q |
330 |
cctaagacaaagttgtaccctatg |
353 |
Q |
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|||||||||||||||||||||||| |
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| T |
2339189 |
cctaagacaaagttgtaccctatg |
2339166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 2347120 - 2347034
Alignment:
| Q |
30 |
ctaatgtgcccactattccacatacaattgtaattcctccaaataccaaatctgaatcagtctgccaaaataagccaagtttaatat |
116 |
Q |
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| T |
2347120 |
ctaatgtgcccactattccacatacaattgtaattcctccaaataccaaatctgcattggtctaccaaaattaaccaactttaatat |
2347034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 353
Target Start/End: Complemental strand, 2346216 - 2346108
Alignment:
| Q |
245 |
atgcataagggatcattggctgaagcaaaacctcaccatgttataaatattgtagatagctttgggaccccaatacgagtaagcacctaagacaaagttg |
344 |
Q |
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|||| ||| ||||||||| |||||| ||| |||||||||| ||||||||| ||| ||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
2346216 |
atgcctaacggatcattgaatgaagcgaaatctcaccatgtgataaatattatagccagctttggggccccaatatgagtaagcacctaagacaaagttg |
2346117 |
T |
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| Q |
345 |
taccctatg |
353 |
Q |
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||| ||||| |
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| T |
2346116 |
tacgctatg |
2346108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 2321882 - 2321812
Alignment:
| Q |
144 |
attgaaagtatcttg-cttaccagaatgccaaacgtgttttattttatacaagaaacgagatatataagaa |
213 |
Q |
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| T |
2321882 |
attgaaagtatcttgacttacaagaatgacagacatgttttattttatacaagaaacaagatatataagaa |
2321812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 283
Target Start/End: Complemental strand, 2331447 - 2331344
Alignment:
| Q |
178 |
tgttttattttatacaagaaacgagatatataagaatgaacaaccatgagatagtaaaggtatattaatgcataagggatcattggctgaagcaaaacct |
277 |
Q |
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|||||||||||||| ||||||| |||||| |||||||||||||| || ||||||||||| |||| ||||||||| ||||||| | |||| ||||| | |
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| T |
2331447 |
tgttttattttatataagaaacaagatatgtaagaatgaacaactat--gatagtaaaggaatatgtatgcataagtgatcatttgatgaaacaaaatca |
2331350 |
T |
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| Q |
278 |
caccat |
283 |
Q |
| |
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|||||| |
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| T |
2331349 |
caccat |
2331344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 2304276 - 2304234
Alignment:
| Q |
178 |
tgttttattttatacaagaaacgagatatataagaatgaacaa |
220 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2304276 |
tgttttattttatacaagaaacaagatatataagaatgaacaa |
2304234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 2346334 - 2346276
Alignment:
| Q |
164 |
cagaatgccaaacgtgttttattttatacaagaaac-gagatatataagaatgaacaac |
221 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||| ||||| |||||||||||||| |
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| T |
2346334 |
cagaatgccaaacatgttttattatatacaagaaactaagataattaagaatgaacaac |
2346276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 346
Target Start/End: Original strand, 36795827 - 36795908
Alignment:
| Q |
265 |
tgaagcaaaacctcaccatgttataaatattgtagatagctttgggaccccaatacgagtaagcacctaagacaaagttgta |
346 |
Q |
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| T |
36795827 |
tgaaacaaaatctcaccatgttatatatactataaccagctttggggccccaatacgagtaagcaccaatgacaaagttgta |
36795908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 36795620 - 36795688
Alignment:
| Q |
30 |
ctaatgtgcccactattccacatacaattgtaattcctccaaataccaaatctgaatcagtctgccaaa |
98 |
Q |
| |
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|||| ||||||| |||||| ||||||||||||||||||||||||| || ||||| || |||||| |||| |
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| T |
36795620 |
ctaaagtgcccaatattccgcatacaattgtaattcctccaaatatcatatctgcattagtctgacaaa |
36795688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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