View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0693_low_17 (Length: 341)
Name: NF0693_low_17
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0693_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 387302 - 387422
Alignment:
| Q |
17 |
ctgataggagctattttggaaaaaatacataaaaaggagggacaaatagagacctcctgtatgcactagttctacaattaggtatatcagtatatatgag |
116 |
Q |
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| T |
387302 |
ctgataggagctattttggaaaaaatacataaaaaggagggacaaatagagacctcctgtatgcactagttctacaattaggcatatcagtatatatgag |
387401 |
T |
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| Q |
117 |
caaaacaatacctccagcata |
137 |
Q |
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| T |
387402 |
caaaacaatacctccagcata |
387422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 35635877 - 35635821
Alignment:
| Q |
151 |
atatccaaatttaaatgatttgccatgactaatttaacttttagaagctagaacaca |
207 |
Q |
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| T |
35635877 |
atatcaaaatttaaatgatttgccatgactattttaacttttagaagctagaacaca |
35635821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 35637039 - 35636976
Alignment:
| Q |
72 |
cctgtatgcactagttctacaattaggtatatcagtatatatgagcaaaacaatacctccagca |
135 |
Q |
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| T |
35637039 |
cctgtatacactagttctacatataggcatatcagtatacattagcaaaccaatacgtccagca |
35636976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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