View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0693_low_18 (Length: 336)
Name: NF0693_low_18
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0693_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 21199368 - 21199094
Alignment:
| Q |
20 |
tacttgtctttatttggttaaggctttcaacaaccacattagttgaaaaagcctgacaactacctatgcaagacattaatcacaaacaacaattttcttt |
119 |
Q |
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| T |
21199368 |
tacttgtctttctttggttaaggctttcaacaaccacattagttgaaaaagcctgacaactacctatgcaagacattaatcacaaacaacaattttcttt |
21199269 |
T |
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| Q |
120 |
tataaataagacattggtatcaaactactgagtgcatttatg-tagaggatctgcaaccttaagaaatctaaagaattaataactatttaaatacttacc |
218 |
Q |
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| T |
21199268 |
tataaataagacattggtatcgaactactgagtgcatttatgttagaggatctgcaaccttaagaaatctaaagaattaataactatttaaatacttacc |
21199169 |
T |
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| Q |
219 |
acattggccaagatgcttgacattggtgacatcacctttcttcgtccaatacacaacatgttagagtcacaactt |
293 |
Q |
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| T |
21199168 |
acattggcctagatgcttgacattggtgacaacacctttcttcgtccaatacacaacatgttagagtcacaactt |
21199094 |
T |
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Back To:
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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 34312117 - 34312206
Alignment:
| Q |
23 |
ttgtctttatttggttaaggctttcaacaaccacattagttgaaaaagcctgacaactacctatgcaagacattaatcacaaacaacaat |
112 |
Q |
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| T |
34312117 |
ttgtctttatttggttgatgccttcaacagctacaacagttgaaaaagcccagcaactacctatacaagacattaatcacaaacaacaat |
34312206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 38304381 - 38304432
Alignment:
| Q |
285 |
tcacaacttggcaatgcttacgttaacttgggttcccaccattacgcttttc |
336 |
Q |
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| T |
38304381 |
tcacaccttgtcaatgcttacgttaactttggttcccaccattacgcttttc |
38304432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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