View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0693_low_21 (Length: 313)
Name: NF0693_low_21
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0693_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 29 - 289
Target Start/End: Original strand, 2327051 - 2327311
Alignment:
| Q |
29 |
atttgaagtgtgtggttttggaagggttaaggcgtcatccaccagggcattttgtgttgcctcatgcaatgagcgatgatgtggttttgaatggttattt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
2327051 |
atttgaagtgtgtggttttggaagggttgaggcgtcatccaccagggcattttgtgttgcctcatgcagtgagcgatgatgtggttttgaatggttattt |
2327150 |
T |
|
| Q |
129 |
ggtgcctaaaaatgggacggtgaatttcatggtggcagagatggggttggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2327151 |
ggtgcctaaaaatgggacggtgaatttcatggtggcagagatggggttggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttg |
2327250 |
T |
|
| Q |
229 |
aaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctg |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2327251 |
aaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctg |
2327311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 29 - 289
Target Start/End: Original strand, 2330766 - 2331026
Alignment:
| Q |
29 |
atttgaagtgtgtggttttggaagggttaaggcgtcatccaccagggcattttgtgttgcctcatgcaatgagcgatgatgtggttttgaatggttattt |
128 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||| |
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|
| T |
2330766 |
atttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcatttcgtgttgcctcacgcagtgagcgaggatgtggttttgaatggttattt |
2330865 |
T |
|
| Q |
129 |
ggtgcctaaaaatgggacggtgaatttcatggtggcagagatggggttggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttg |
228 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
2330866 |
ggtgcctaaagatgggacggtgaattttatggttgcagagatggggttggaccctcgtgtttgggaggatccaatggaatttaagccagaaaggtttttg |
2330965 |
T |
|
| Q |
229 |
aaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctg |
289 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
2330966 |
aaggatgagacttttgacattacaggaagtaaagagataaagatgatgccatttggagctg |
2331026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 29 - 290
Target Start/End: Original strand, 2303496 - 2303757
Alignment:
| Q |
29 |
atttgaagtgtgtggttttggaagggttaaggcgtcatccaccagggcattttgtgttgcctcatgcaatgagcgatgatgtggttttgaatggttattt |
128 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||||||||||| ||||||||| ||||||| || || ||| || |||||||||||||| |||||||| |
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|
| T |
2303496 |
atttgaaatgtgttgttttggaagggttgaggcgtcatccaccggggcattttctgttgccacacgcggtgaaagaggatgtggttttgaacggttattt |
2303595 |
T |
|
| Q |
129 |
ggtgcctaaaaatgggacggtgaatttcatggtggcagagatggggttggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttg |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
2303596 |
ggtgcctaaaaatgggacggtgaatttcatgctggcggagatggggtgggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggttttgg |
2303695 |
T |
|
| Q |
229 |
aaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctga |
290 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| ||||| |||||||||||||||| |||||| |
|
|
| T |
2303696 |
aaggatgagaattttgacattacagggagtaaggagataaagatgatgccgtttgaagctga |
2303757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 29 - 289
Target Start/End: Original strand, 2321197 - 2321458
Alignment:
| Q |
29 |
atttgaagtgtgtggttttggaagggttaaggcgtcatccaccaggg-cattttgtgttgcctcatgcaatgagcgatgatgtggttttgaatggttatt |
127 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||| | || | ||| || |||||||||||||| ||||||| |
|
|
| T |
2321197 |
atttgaagtgcgtggttttggaagggatgaggcgtcatccaccaggggcattttgtgttggcacacacggtgaaagaggatgtggttttgaacggttatt |
2321296 |
T |
|
| Q |
128 |
tggtgcctaaaaatgggacggtgaatttcatggtggcagagatggggttggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggttttt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2321297 |
tggtgcctaaaaatgggacggtgaatttcatgctgtcggagatggcgtgggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggttttt |
2321396 |
T |
|
| Q |
228 |
gaaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctg |
289 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2321397 |
gaaggatgagacttttgatattatagggagtaaagagataaagatgatgccgtttggagctg |
2321458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 29 - 289
Target Start/End: Original strand, 2293883 - 2294143
Alignment:
| Q |
29 |
atttgaagtgtgtggttttggaagggttaaggcgtcatccaccagggcattttgtgttgcctcatgcaatgagcgatgatgtggttttgaatggttattt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||| | ||| |||||| || || ||| || |||||||||||| | |||||||| |
|
|
| T |
2293883 |
atttgaagtgtgtggttttggaagggttgaggcgtcatccaccggggaaatttccgttgccacacgcggtgaaagaggatgtggttttggacggttattt |
2293982 |
T |
|
| Q |
129 |
ggtgcctaaaaatgggacggtgaatttcatggtggcagagatggggttggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttg |
228 |
Q |
| |
|
|||||||||||| ||||||||||||||| || |||| ||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
2293983 |
ggtgcctaaaaacgggacggtgaatttcttgctggcggagatggcgttggatcctcgtgtttgggaggacccgttggagtttaagccagaaaggtttttg |
2294082 |
T |
|
| Q |
229 |
aaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctg |
289 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
2294083 |
aaggatgagacttttgacattacaggaagtaaagagataaagatgatgccgtttggagctg |
2294143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 32 - 284
Target Start/End: Original strand, 2351075 - 2351327
Alignment:
| Q |
32 |
tgaagtgtgtggttttggaagggttaaggcgtcatccaccagggcattttgtgttgcctcatgcaatgagcgatgatgtggttttgaatggttatttggt |
131 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||| |||||| ||||||||| || || ||| || |||||| |||| || ||||||||||| |
|
|
| T |
2351075 |
tgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttgccacacgcggtgacagaggatgtgctttttaacggttatttggt |
2351174 |
T |
|
| Q |
132 |
gcctaaaaatgggacggtgaatttcatggtggcagagatggggttggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaag |
231 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2351175 |
gcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgtgtttgggaggatccaatggagtttaagccagagaggtttttgaag |
2351274 |
T |
|
| Q |
232 |
gatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttgg |
284 |
Q |
| |
|
||||| || ||||| ||||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
2351275 |
gatgaaacatttgacattacggggagtaaagagataaagatgatgccatttgg |
2351327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 29 - 289
Target Start/End: Original strand, 2310214 - 2310474
Alignment:
| Q |
29 |
atttgaagtgtgtggttttggaagggttaaggcgtcatccaccagggcattttgtgttgcctcatgcaatgagcgatgatgtggttttgaatggttattt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| | ||| | ||| |||||| || || ||| || |||||||||||| | |||||||| |
|
|
| T |
2310214 |
atttgaagtgtgtggttttggaagggttgaggcgtcatccatcggggaaatttccgttgccacacgcggtgaaagaggatgtggttttggacggttattt |
2310313 |
T |
|
| Q |
129 |
ggtgcctaaaaatgggacggtgaatttcatggtggcagagatggggttggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttg |
228 |
Q |
| |
|
|||||||||||| ||||||||||||||| | |||| ||||||| |||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
2310314 |
ggtgcctaaaaacgggacggtgaatttctttctggcggagatggcgttggatcgtcgtgtttgggaggacccattggagtttaagccagaaaggtttttg |
2310413 |
T |
|
| Q |
229 |
aaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggagctg |
289 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
2310414 |
aaggatgagacttttgtcattccaggaagtaaagagataaagatgatgccgtttggagctg |
2310474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 34 - 286
Target Start/End: Original strand, 41127083 - 41127335
Alignment:
| Q |
34 |
aagtgtgtggttttggaagggttaaggcgtcatccaccagggcattttgtgttgcctcatgcaatgagcgatgatgtggttttgaatggttatttggtgc |
133 |
Q |
| |
|
||||||||| ||||||||||| | ||| |||| ||||| ||||| ||||||||||| ||||| ||| || ||||||||||| | ||||| ||| ||| |
|
|
| T |
41127083 |
aagtgtgtgattttggaagggctgaggtgtcacccaccggggcactttgtgttgccccatgcggtgaaggaggatgtggttttcgacggttacttgctgc |
41127182 |
T |
|
| Q |
134 |
ctaaaaatgggacggtgaatttcatggtggcagagatggggttggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaagga |
233 |
Q |
| |
|
||||||||| | |||||||||||||||||||| || ||| ||| ||| |||||||||| |||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
41127183 |
ctaaaaatgtggtagtgaatttcatggtggcagacatagggagggaccctagtgtttgggaagatccattggagtttaaaccagaaaggtttttgaagga |
41127282 |
T |
|
| Q |
234 |
tgagacttttgatattacagggagtaaagagatcaagatgatgccgtttggag |
286 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||||| ||||||||||||||||||| |
|
|
| T |
41127283 |
tgaggcttttgatattaccgggactaaagagataaagatgatgccgtttggag |
41127335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 225
Target Start/End: Original strand, 26506749 - 26506883
Alignment:
| Q |
91 |
catgcaatgagcgatgatgtggttttgaatggttatttggtgcctaaaaatgggacggtgaatttcatggtggcagagatggggttggatcctcgtgttt |
190 |
Q |
| |
|
|||||| ||| ||| |||||| |||| || ||||| |||||||||||||||||||| || ||||| |||||||||||| | |||| |||||| |||||| |
|
|
| T |
26506749 |
catgcagtgaccgaggatgtgatttttaacggttacttggtgcctaaaaatgggacagttaattttatggtggcagaggttgggtgggatccaagtgttt |
26506848 |
T |
|
| Q |
191 |
gggaggatccaatggagtttaagccagaaaggttt |
225 |
Q |
| |
|
|||||||||| |||| || |||||||| |||||| |
|
|
| T |
26506849 |
gggaggatcccatggcattcaagccagataggttt |
26506883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 26494725 - 26494838
Alignment:
| Q |
112 |
gttttgaatggttatttggtgcctaaaaatgggacggtgaatttcatggtggcagagatggggttggatcctcgtgtttgggaggatccaatggagttta |
211 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| || || || ||||| |||||||||||||| | || ||||| |
|
|
| T |
26494725 |
gttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattagatccaacggtttgggaggatcctacggtgttta |
26494824 |
T |
|
| Q |
212 |
agccagaaaggttt |
225 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
26494825 |
agccagagaggttt |
26494838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 55017070 - 55017117
Alignment:
| Q |
242 |
ttgatattacagggagtaaagagatcaagatgatgccgtttggagctg |
289 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||||||||||||| |||| |
|
|
| T |
55017070 |
ttgatattacaggaactaaagagatgaagatgatgccgtttggtgctg |
55017117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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