View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0693_low_22 (Length: 304)

Name: NF0693_low_22
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0693_low_22
NF0693_low_22
[»] chr2 (3 HSPs)
chr2 (1-93)||(29805667-29805761)
chr2 (140-214)||(29805861-29805935)
chr2 (242-280)||(29805961-29805999)


Alignment Details
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 29805667 - 29805761
Alignment:
Q  1 ttttcaagcatcaaggatgtgtataaagcaaaatagaagtctcatttatcttcgtat--tctcattcacatgagaaaattagttatatacacgat 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||  ||||||||||||||||||||||||||||||||||||    
T  29805667 ttttcaagcatcaaggatgtgtataaagcaaaatagaagtctcatttatcctcctattctctcattcacatgagaaaattagttatatacacgat 29805761  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 29805861 - 29805935
Alignment:
Q  140 caaacattctttatcgtagagtaacccgagtctctatcctccacataaacaaattaatagtctaagatatgtgtg 214  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  29805861 caaacattctttatcgtagagtaacccaagtctctatcctccacataaacaaatgaatagtctaagatatgtgtg 29805935  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 29805961 - 29805999
Alignment:
Q  242 tcataatacataattgaatagtaccattcaagaggtgtt 280  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29805961 tcataatacataattgaatagtaccattcaagaggtgtt 29805999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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