View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0693_low_27 (Length: 268)
Name: NF0693_low_27
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0693_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 36301239 - 36301472
Alignment:
| Q |
24 |
aattttgaataaaaagaatgcaacaggttctgttttgaattaattttagtatgttgtaattaatttctaatgtaaatataattctactaaccatgatatg |
123 |
Q |
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| T |
36301239 |
aattttgaataaaaagcatgcaacaggttctgttttgaattaattttagtatgttgtaattaatttctaatgtaaatataattctactaaccatgatatg |
36301338 |
T |
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| Q |
124 |
ttccgacttgtagaacaagttaagggaccgggctgttttttacactctttgtgatgattggagggtggcttatggaaaatgggaatttgatccaatgaag |
223 |
Q |
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| T |
36301339 |
ttccgacttgtagaacaagttaagggaccgggctgttttttacactcgttgtgatgattggagggtggcttatggaaaatgggaatttgatccaatgaaa |
36301438 |
T |
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| Q |
224 |
ttaaggaatccattccctcccagaagaagttcat |
257 |
Q |
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| T |
36301439 |
ttaaggaatccattccctcccagaagaagttcat |
36301472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 69 - 252
Target Start/End: Original strand, 36299717 - 36299900
Alignment:
| Q |
69 |
ttagtatgttgtaattaatttctaatgtaaatataattctactaaccatgatatgttccgacttgtagaacaagttaagggaccgggctgttttttacac |
168 |
Q |
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| T |
36299717 |
ttagtatattgtaattaatttctaatgtaaatataattctactaaccgtgatatgttctgacttgtagaacaagttatgggaccaggctgttttttacac |
36299816 |
T |
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| Q |
169 |
tctttgtgatgattggagggtggcttatggaaaatgggaatttgatccaatgaagttaaggaatccattccctcccagaagaag |
252 |
Q |
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| T |
36299817 |
tctttgtgatgattcgaggatggcttatggaaaatgggaatttgatccaatgaagataaagaatccactccctcacaaaagaag |
36299900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 36297157 - 36297222
Alignment:
| Q |
177 |
atgattggagggtggcttatggaaaatgggaatttgatccaatgaagttaaggaatccattccctc |
242 |
Q |
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| T |
36297157 |
atgattggaaggtagcttttggaaaatgggaatttgatccaatgaagctaagcaatccattccctc |
36297222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 81 - 257
Target Start/End: Complemental strand, 48299415 - 48299238
Alignment:
| Q |
81 |
aattaatttctaatgt-aaatataattctactaaccatgatatgttccgacttgtagaacaagttaagggaccgggctgttttttacactctttgtgatg |
179 |
Q |
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| T |
48299415 |
aattaatttctgatgttaaatataattctactaaccatgatatgtacctacttataggacaagttaagggaacgcgctgttttttacgctctttgtgatg |
48299316 |
T |
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| Q |
180 |
attggagggtggcttatggaaaatgggaatttgatccaatgaagttaaggaatccattccctcccagaagaagttcat |
257 |
Q |
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| T |
48299315 |
attggagattggcttttggaaaatgggaatttgatccagtgaagataaggaatccattccctcacaaaagaagttcat |
48299238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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