View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0693_low_3 (Length: 503)
Name: NF0693_low_3
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0693_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 7e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 92 - 246
Target Start/End: Complemental strand, 47070233 - 47070078
Alignment:
| Q |
92 |
tttcttaacagtgctaacggtgttaacataaaggggaggtaagtgttttttctaaactagaagggtgtttgtgttgtttagtgtaacttcgtgggaggt- |
190 |
Q |
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| T |
47070233 |
tttcttaacagtgctaacggtgttaacataaaggggaggtaagtgttttttctaaactagaagggtgtttgtgttgtttagtgtaacttcgtgggaggtc |
47070134 |
T |
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| Q |
191 |
aatgcaatttgccctatctaatgcgagtctttccaattactcaacattgtctccac |
246 |
Q |
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| T |
47070133 |
aatgcaatttgccctatctaatgcgagtctttccaattactcaacattgtctccac |
47070078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 403 - 490
Target Start/End: Complemental strand, 47069922 - 47069834
Alignment:
| Q |
403 |
accgatgttattatgcaagacatgttctcttcctccaaa-cttcaaagatattttctgcaaaatttatctcctattcaacttcttcttc |
490 |
Q |
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| T |
47069922 |
accgatgttattatgcaagagatgttctcttcctccaaaacttcaaagatattttctgcaaaatttatctcctattcaacttcttcttc |
47069834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 47070028 - 47069964
Alignment:
| Q |
297 |
agcccgaaaaagtagaagaattataatagccaacggcaataaagtagtatccacttgccaaaacc |
361 |
Q |
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| T |
47070028 |
agcccgaaaaagtagaagaattataatagccaacggcaataaagtagtatccacttgccaaaacc |
47069964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 408 - 469
Target Start/End: Original strand, 10682669 - 10682730
Alignment:
| Q |
408 |
tgttattatgcaagacatgttctcttcctccaaacttcaaagatattttctgcaaaatttat |
469 |
Q |
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| T |
10682669 |
tgttattttgcaagacatgttctctttctccaagcttcaaagagattttctacaaaatttat |
10682730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 14745405 - 14745502
Alignment:
| Q |
106 |
taacggtgttaacataaaggggaggtaagtg--ttttttctaaactagaagggtgtttgtgttgtttagtgtaacttcgtgggagg-taatgcaattt |
200 |
Q |
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| T |
14745405 |
taacggtgttcacttaaaggggaagtaagtgttttttttataaaatagaggggtgttagtgttctttagtgaaacctcaagggaggttaatgcaattt |
14745502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 36074475 - 36074539
Alignment:
| Q |
106 |
taacggtgttaacataaaggggaggtaagtgttttttctaaactagaagggtgtttgtgttgttta |
171 |
Q |
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| T |
36074475 |
taacggtgttaaaataa-ggggaggtttgtgttttttgaaaactagaggggtatttgtgttgttta |
36074539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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