View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0693_low_31 (Length: 251)
Name: NF0693_low_31
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0693_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 4803624 - 4803759
Alignment:
| Q |
11 |
cacagaagtgagatgttattagaaaaatgcaatgcggcattgtgactttagacttttaaaagggaattgtgtgtgacagtcttaacgtttgcttagagtt |
110 |
Q |
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| T |
4803624 |
cacagaagtgagatgttattagaaaaatgctatgcggcattgtgactttagacttttaaaagggaattgtgtgtgacagtcttaacgtttgcttagagtt |
4803723 |
T |
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| Q |
111 |
gcaaaagggatattcagcaacttctggtaaaccatt |
146 |
Q |
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| T |
4803724 |
gcaaaagggatattcagcaacttctggtaaaccatt |
4803759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 120 - 250
Target Start/End: Original strand, 4806193 - 4806321
Alignment:
| Q |
120 |
atattcagcaacttctggtaaaccattacacatacaaatgaaaaccaggttcaatatatctttttgaaaccaagaaccaccgaaaaccgacacttgcatt |
219 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| | || |||||||||| ||||||||| ||||||| |
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| T |
4806193 |
atattcagcaacttctggtaaatcattacacacacaaatgaaaaccaggtt-aatatatcttttcggaagaaagaaccacc-aaaaccgacgtttgcatt |
4806290 |
T |
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| Q |
220 |
caagaacttcggtctgattcttgtgtcggta |
250 |
Q |
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| T |
4806291 |
caagaacttcagtctgattcttgtgtcggta |
4806321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 4803760 - 4803833
Alignment:
| Q |
178 |
tctttttgaaaccaagaaccaccgaaaaccgacacttgcattcaagaacttcggtctgattcttgtgtcggtat |
251 |
Q |
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| T |
4803760 |
tctttttgaaaccaagaaccaccgaaaaccgacacttgcattcaagaacttcggtctgattcttgtgtcggtat |
4803833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 4824146 - 4824251
Alignment:
| Q |
120 |
atattcagcaacttctggtaaaccattacacatacaaatgaaaaccaggttcaatatatctttttgaaaccaagaaccaccgaaaaccgacacttgcatt |
219 |
Q |
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|||||||| ||||||||||||| ||| |||| ||||||| ||||||||||||||||||| ||||| || ||| ||||||| |||| ||| ||||||||| |
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| T |
4824146 |
atattcagaaacttctggtaaaacatgacactcacaaatgtaaaccaggttcaatatatccttttggaagcaaaaaccacc-aaaaacgatacttgcatt |
4824244 |
T |
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| Q |
220 |
caagaac |
226 |
Q |
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| ||||| |
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| T |
4824245 |
ctagaac |
4824251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 4819127 - 4819204
Alignment:
| Q |
120 |
atattcagcaacttctggtaaaccattacacatacaaatgaaaaccaggttcaatatatctttttgaaaccaagaacc |
197 |
Q |
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| T |
4819127 |
atattcagaaacttcaaataaaccattatacacgcaaatgtaaaccaggttcagtatatctttttggaagcaagaacc |
4819204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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