View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0693_low_32 (Length: 251)
Name: NF0693_low_32
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0693_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 47582518 - 47582758
Alignment:
| Q |
1 |
tgacataataagacatcaatgtaatcataccatatattactgtcaacccatgattactatatctagcaaaagatatatcttctgtaagaacttgggagaa |
100 |
Q |
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| T |
47582518 |
tgacataataagacatcaatgtaatcataccatatattactgtcaacccatgattactatatctagcaaaagatatatcttctgtaagaacttgggagaa |
47582617 |
T |
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| Q |
101 |
caagaattgaaatcaccaataatcttttcctgtccctctaatgaaaatataattagttcatcaatattttatcaattaggagagggtgttagcttttcgt |
200 |
Q |
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| T |
47582618 |
caagaattgaaatcaccaataatcttttcctgtccctctaatgaaaatataattagttcatcaatattttatcaattaggagagggtgttagcttttcgt |
47582717 |
T |
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| Q |
201 |
gaaaaaagtttctgctaggtgttatgtttctactttctgtg |
241 |
Q |
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| T |
47582718 |
gaaaaaagtttctgctagatgttatgtttctactttctgtg |
47582758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 171
Target Start/End: Original strand, 47570697 - 47570847
Alignment:
| Q |
28 |
taccatatattactgtcaacccatgattactatatctagcaaaagatatat--cttctgtaagaacttgg------gagaacaagaattgaaatcaccaa |
119 |
Q |
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| T |
47570697 |
taccatatatcactgtcaacccatggatactatatctagcaagagatatatatcttctgcaataacttggtacattgagaacgtgaactgaaatcaccaa |
47570796 |
T |
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| Q |
120 |
taatcttttcctgtccctctaatgaaaatataattagttcatcaatatttta |
171 |
Q |
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| T |
47570797 |
taatcttttcctatccctctaatgaaaa-ataaatagttaaacaatatttta |
47570847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 47572862 - 47572901
Alignment:
| Q |
30 |
ccatatattactgtcaacccatgattactatatctagcaa |
69 |
Q |
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| T |
47572862 |
ccatatattactgtcaacccatgactactatatctagcaa |
47572901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 47573217 - 47573269
Alignment:
| Q |
143 |
gaaaatataattagttcatcaatattttatcaattaggagagggtgttagcttt |
196 |
Q |
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| T |
47573217 |
gaaaatataagtagttcatcaatattttaagaactaggagagggt-ttagcttt |
47573269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 47566249 - 47566304
Alignment:
| Q |
115 |
accaataatcttttcctgtccctctaatgaaaatataattagttcatcaatatttta |
171 |
Q |
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| T |
47566249 |
accaataatcttttcttatccctcaaatgaaaa-ataaatagttaatcaatatttta |
47566304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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