View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0693_low_33 (Length: 248)

Name: NF0693_low_33
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0693_low_33
NF0693_low_33
[»] chr5 (7 HSPs)
chr5 (126-233)||(2532050-2532157)
chr5 (126-233)||(2532503-2532610)
chr5 (153-234)||(35777044-35777125)
chr5 (127-203)||(9070396-9070472)
chr5 (135-201)||(29413287-29413353)
chr5 (126-203)||(18848014-18848091)
chr5 (179-234)||(9784205-9784260)
[»] chr1 (19 HSPs)
chr1 (125-233)||(20114569-20114677)
chr1 (135-233)||(26944443-26944541)
chr1 (126-234)||(46320455-46320563)
chr1 (135-233)||(253288-253386)
chr1 (126-233)||(32160696-32160803)
chr1 (126-233)||(33206005-33206112)
chr1 (126-228)||(15354151-15354253)
chr1 (153-233)||(32161321-32161401)
chr1 (128-234)||(15354562-15354668)
chr1 (165-233)||(46319714-46319782)
chr1 (172-233)||(253058-253119)
chr1 (126-195)||(52427495-52427564)
chr1 (128-203)||(21263363-21263438)
chr1 (130-201)||(15660235-15660303)
chr1 (126-193)||(15659871-15659938)
chr1 (65-98)||(20117461-20117494)
chr1 (205-233)||(44596825-44596853)
chr1 (178-234)||(46886441-46886497)
chr1 (178-234)||(51271645-51271701)
[»] chr6 (3 HSPs)
chr6 (126-233)||(11687894-11688001)
chr6 (152-234)||(11687422-11687504)
chr6 (205-233)||(14012455-14012483)
[»] chr8 (9 HSPs)
chr8 (126-233)||(7577080-7577187)
chr8 (126-233)||(27704025-27704132)
chr8 (126-233)||(7577590-7577697)
chr8 (126-233)||(27704532-27704639)
chr8 (126-195)||(37577732-37577801)
chr8 (126-233)||(37577295-37577402)
chr8 (178-234)||(41250126-41250181)
chr8 (188-233)||(34234547-34234592)
chr8 (190-234)||(44052292-44052336)
[»] chr2 (18 HSPs)
chr2 (126-233)||(17688250-17688357)
chr2 (126-231)||(28138287-28138392)
chr2 (126-234)||(28137820-28137928)
chr2 (144-231)||(17688778-17688865)
chr2 (153-232)||(39378343-39378422)
chr2 (177-233)||(39377665-39377721)
chr2 (128-203)||(43978122-43978197)
chr2 (178-234)||(23346744-23346799)
chr2 (178-234)||(43870175-43870231)
chr2 (178-233)||(23347382-23347436)
chr2 (125-203)||(43977587-43977666)
chr2 (130-168)||(13862989-13863027)
chr2 (126-195)||(432097-432166)
chr2 (178-231)||(3943246-3943298)
chr2 (126-203)||(16340546-16340623)
chr2 (178-234)||(7190005-7190060)
chr2 (178-234)||(10825181-10825237)
chr2 (128-176)||(33667788-33667836)
[»] chr7 (9 HSPs)
chr7 (126-233)||(36185558-36185665)
chr7 (158-233)||(40323665-40323740)
chr7 (126-203)||(4997829-4997906)
chr7 (126-176)||(46089004-46089054)
chr7 (166-234)||(36185153-36185220)
chr7 (125-203)||(35200761-35200840)
chr7 (128-195)||(4997357-4997425)
chr7 (181-233)||(40323232-40323284)
chr7 (191-227)||(48194640-48194676)
[»] chr3 (15 HSPs)
chr3 (128-234)||(33304964-33305070)
chr3 (128-203)||(54203495-54203570)
chr3 (153-233)||(5136550-5136630)
chr3 (153-233)||(5138296-5138376)
chr3 (128-203)||(3350017-3350092)
chr3 (143-226)||(44687470-44687553)
chr3 (144-202)||(1388117-1388175)
chr3 (158-231)||(13742715-13742788)
chr3 (125-202)||(3349486-3349564)
chr3 (126-176)||(55122110-55122160)
chr3 (178-234)||(43476154-43476210)
chr3 (127-190)||(44685870-44685933)
chr3 (126-176)||(11510260-11510310)
chr3 (126-176)||(55121616-55121666)
chr3 (135-195)||(18746597-18746657)
[»] scaffold0153 (1 HSPs)
scaffold0153 (128-203)||(16887-16962)
[»] chr4 (5 HSPs)
chr4 (126-163)||(31689022-31689059)
chr4 (128-169)||(40900623-40900664)
chr4 (149-195)||(30837151-30837197)
chr4 (205-234)||(44674128-44674157)
chr4 (205-234)||(51492035-51492064)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 2532157 - 2532050
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgt 225  Q
    |||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  2532157 cgtcggcagttaactgccgaaggaatttcggtagttaattgcagccggttccaaacttcgatagttaactaccgcaggagcaaaaacgtcatttacttgt 2532058  T
Q  226 gtggcaca 233  Q
    ||||||||    
T  2532057 gtggcaca 2532050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 2532503 - 2532610
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgt 225  Q
    |||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| | |||||||||||||||||||    
T  2532503 cgtcggcagttaactgccgaagaaacttcgggagttaactgcagccggttccaaacttcggtagttaattaccgcaggggtaaaaacgtcatttactcgt 2532602  T
Q  226 gtggcaca 233  Q
    ||||||||    
T  2532603 gtggcaca 2532610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 35777044 - 35777125
Alignment:
Q  153 tcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcacaa 234  Q
    |||| |||||| ||||||||||||||||||||| ||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  35777044 tcggcagttaactgcagccggttccaaacttcggtagttaactgccgcagaggcaaaaacgtcatttactcgtgtggcacaa 35777125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 9070396 - 9070472
Alignment:
Q  127 gtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcagg 203  Q
    ||||||| |||||||||||||||||||||| |||||| |||||| ||||||  |||||| ||||||||| |||||||    
T  9070396 gtcggcagttaactgccgaaggaacttcggaagttaactgcagctggttccttacttcggtagttaactgccgcagg 9070472  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 29413287 - 29413353
Alignment:
Q  135 ttaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgca 201  Q
    |||| ||||||||||||||||| |||||| |||||||  || ||||||||||||||||||| |||||    
T  29413287 ttaattgccgaaggaacttcggtagttaactgcagccaatttcaaacttcgatagttaactgccgca 29413353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 18848014 - 18848091
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcagg 203  Q
    |||||||| ||||||| |||||||||||||| |||||| ||||| |||||  |||||||| ||||||| ||| |||||    
T  18848014 cgtcggcagttaactgtcgaaggaacttcggtagttaactgcagtcggttttaaacttcggtagttaattactgcagg 18848091  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 9784205 - 9784260
Alignment:
Q  179 aacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcacaa 234  Q
    |||||||||||||||||  |||||| |||||||| ||||||| ||||||| |||||    
T  9784205 aacttcgatagttaactgtcgcaggggcaaaaacatcatttattcgtgtgacacaa 9784260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 20114677 - 20114569
Alignment:
Q  125 ccgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcg 224  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||    
T  20114677 ccgttggcaattaactgccgaaggaacttcggtagttaactgcagccggttcccaacttcggtagttaactaccgcaggggcaaaaacgtcatttactcg 20114578  T
Q  225 tgtggcaca 233  Q
    |||||||||    
T  20114577 tgtggcaca 20114569  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 26944541 - 26944443
Alignment:
Q  135 ttaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcaca 233  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||    
T  26944541 ttaactgccgaaggaacttcgggagttaactgcagccggttccaaacttcgatagttaactgccgtaggggcaaaaacgtcatttactcgtgtggcaca 26944443  T

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Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 46320455 - 46320563
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgt 225  Q
    |||||||| ||||||||||||||| |||||| |||||| ||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  46320455 cgtcggcagttaactgccgaaggaccttcggtagttaactgcagccggtttcaaacttcggtagttaactaccgcaggggcaaaaacgtcatttactcgt 46320554  T
Q  226 gtggcacaa 234  Q
    |||||||||    
T  46320555 gtggcacaa 46320563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 253288 - 253386
Alignment:
Q  135 ttaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcaca 233  Q
    ||||||| |||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||    
T  253288 ttaactgtcgaaggaacttcggtagttaactgcagccggttccaaacttcggtagttaactaccgcaggggcaaaaatgtcatttactcgtgtggcaca 253386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 32160803 - 32160696
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgt 225  Q
    |||||||| ||||||| |||||||||||||| |||||| ||||||||||||||||||||| ||||||||| ||||||| | ||||||| |||||||||||    
T  32160803 cgtcggcagttaactgtcgaaggaacttcggaagttaactgcagccggttccaaacttcggtagttaactgccgcaggggtaaaaacgacatttactcgt 32160704  T
Q  226 gtggcaca 233  Q
    ||||||||    
T  32160703 gtggcaca 32160696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 33206005 - 33206112
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgt 225  Q
    |||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||| || |||||| ||||||| | ||||| |||||||||||||    
T  33206005 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggttccaaacttcggtaattaactgccgcaggggtaaaaatgtcatttactcgt 33206104  T
Q  226 gtggcaca 233  Q
    ||||||||    
T  33206105 gtggcaca 33206112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 228
Target Start/End: Complemental strand, 15354253 - 15354151
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgt 225  Q
    |||||||| |||||||||||||||| ||||| |||||| || ||||||||||||||||||||||||||||| || ||| | ||||| |||||||||||||    
T  15354253 cgtcggcagttaactgccgaaggaatttcggtagttaactgtagccggttccaaacttcgatagttaactatcgtaggagtaaaaatgtcatttactcgt 15354154  T
Q  226 gtg 228  Q
    |||    
T  15354153 gtg 15354151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 32161321 - 32161401
Alignment:
Q  153 tcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcaca 233  Q
    |||| |||||| ||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  32161321 tcggtagttaactgcagccggttccaaacttcggtagttaactgccgcaggggcaaaaacgtcatttactcgtgtggcaca 32161401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 15354562 - 15354668
Alignment:
Q  128 tcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgt 227  Q
    |||||| |||||||||||||||||||||| ||||||  ||||||||||| ||||||| ||| |||||| | |||||   |||||||||||||||||||||    
T  15354562 tcggcagttaactgccgaaggaacttcggtagttaaccgcagccggttctaaacttcaatatttaactgctgcagggataaaaacgtcatttactcgtgt 15354661  T
Q  228 ggcacaa 234  Q
    | |||||    
T  15354662 gacacaa 15354668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 46319782 - 46319714
Alignment:
Q  165 tgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcaca 233  Q
    |||||||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||||||    
T  46319782 tgcagccggttctaaacttcggtagttaactaccgcaggaacaaaaacgtcatttactcgtgtggcaca 46319714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 253119 - 253058
Alignment:
Q  172 ggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcaca 233  Q
    |||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||    
T  253119 ggttccaaacttcggtagataactaccgcaggggcaaaaacgtcatttactcgtgtggcaca 253058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 52427495 - 52427564
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaact 195  Q
    |||||||| ||||||| |||||||||||||  |||||| ||||||||||||||||||||| |||||||||    
T  52427495 cgtcggcagttaactgtcgaaggaacttcgatagttaactgcagccggttccaaacttcggtagttaact 52427564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 21263438 - 21263363
Alignment:
Q  128 tcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcagg 203  Q
    |||||| ||||||| ||||| |||||||||| |||| ||||| ||||||||||||||| ||||||||| |||||||    
T  21263438 tcggcagttaactgtcgaagaaacttcgggaattaactgcagtcggttccaaacttcggtagttaactgccgcagg 21263363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 15660235 - 15660303
Alignment:
Q  130 ggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgca 201  Q
    |||| |||||||||||||||||   | ||||||| ||||||||||||||||| ||| ||||||||| |||||    
T  15660235 ggcagttaactgccgaaggaac---gagagttaactgcagccggttccaaacatcggtagttaactgccgca 15660303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 15659938 - 15659871
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaa 193  Q
    ||||| || |||||||  |||||||||||   |||||| || ||||||||||||||||||||||||||    
T  15659938 cgtcgacagttaactgttgaaggaacttcaatagttaactgtagccggttccaaacttcgatagttaa 15659871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 20117494 - 20117461
Alignment:
Q  65 aaaacaaattaatgagttcctcggcagtaaggtg 98  Q
    ||||||||||||||||||| ||||||||||||||    
T  20117494 aaaacaaattaatgagttcttcggcagtaaggtg 20117461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 44596853 - 44596825
Alignment:
Q  205 gcaaaaacgtcatttactcgtgtggcaca 233  Q
    |||||||||||||||||||||||||||||    
T  44596853 gcaaaaacgtcatttactcgtgtggcaca 44596825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 46886441 - 46886497
Alignment:
Q  178 aaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcacaa 234  Q
    ||||||||  |||||||| |||  || ||||||||||||||||||||||| ||||||    
T  46886441 aaacttcggcagttaactgccgagggggcaaaaacgtcatttactcgtgtagcacaa 46886497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 51271645 - 51271701
Alignment:
Q  178 aaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcacaa 234  Q
    ||||||||  |||||||| |||  || ||||||||||||||||| ||||||||||||    
T  51271645 aaacttcggcagttaactgccgagggggcaaaaacgtcatttacccgtgtggcacaa 51271701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 11687894 - 11688001
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgt 225  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||| | |||||||||||||||||||    
T  11687894 cgtcggcagttaactgccgaaggaacttcgggagttaattgcagccgattccaaacttcggtagttaactgccgcaggggtaaaaacgtcatttactcgt 11687993  T
Q  226 gtggcaca 233  Q
    ||||||||    
T  11687994 gtggcaca 11688001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 11687504 - 11687422
Alignment:
Q  152 ttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcacaa 234  Q
    |||||||||||| |||||||||||  |||||||| ||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  11687504 ttcgggagttaactgcagccggttttaaacttcggtagttaactgccgcaggggtaaaaacgtcatttactcgtgtggcacaa 11687422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 14012455 - 14012483
Alignment:
Q  205 gcaaaaacgtcatttactcgtgtggcaca 233  Q
    |||||||||||||||||||||||||||||    
T  14012455 gcaaaaacgtcatttactcgtgtggcaca 14012483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 7577187 - 7577080
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgt 225  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||| | ||||||||||||||||| |    
T  7577187 cgtcggcagttaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcggtagttaactgtcgcaggggtaaaaacgtcatttactcat 7577088  T
Q  226 gtggcaca 233  Q
    ||||||||    
T  7577087 gtggcaca 7577080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 27704132 - 27704025
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgt 225  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||||||| | ||    
T  27704132 cgtcggcagttaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcggtagttaactgccgcaggggtaaaaacgtcatttatttgt 27704033  T
Q  226 gtggcaca 233  Q
    ||||||||    
T  27704032 gtggcaca 27704025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 7577590 - 7577697
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgt 225  Q
    |||||||| |||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||| | ||||||| | |||||||||||||||||||    
T  7577590 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggtttcaaacttcggtagttaattgccgcaggggtaaaaacgtcatttactcgt 7577689  T
Q  226 gtggcaca 233  Q
    ||||||||    
T  7577690 gtggcaca 7577697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 27704532 - 27704639
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgt 225  Q
    |||||||| |||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||||| | ||||| | |||||||||||||| ||||    
T  27704532 cgtcggcagttaactgccgaaggaacttcggtagttaactgcagccggtttcaaacttcggtagttaactgctgcaggggtaaaaacgtcatttattcgt 27704631  T
Q  226 gtggcaca 233  Q
    ||||||||    
T  27704632 gtggcaca 27704639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 37577732 - 37577801
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaact 195  Q
    |||||||| ||||| | |||||||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  37577732 cgtcggcagttaaccgtcgaaggaacttcggtagttaattgcagccggttcaaaacttcggtagttaact 37577801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 37577402 - 37577295
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgt 225  Q
    |||||||| ||||| ||||||| |||||| | |||||  || || ||||||||||||| | ||||||||||| ||||  |||||| || |||||| ||||    
T  37577402 cgtcggcagttaacggccgaagaaacttcagtagttacctgtagtcggttccaaacttaggtagttaactactgcagaggcaaaatcggcatttattcgt 37577303  T
Q  226 gtggcaca 233  Q
    ||| ||||    
T  37577302 gtgacaca 37577295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 41250126 - 41250181
Alignment:
Q  178 aaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcacaa 234  Q
    ||||||||| |||||||||||| ||| |||||||||||| ||||||||||| |||||    
T  41250126 aaacttcgacagttaactaccg-aggggcaaaaacgtcaattactcgtgtgccacaa 41250181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 34234592 - 34234547
Alignment:
Q  188 agttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcaca 233  Q
    ||||||||||||  || | |||||||||||||||||||||||||||    
T  34234592 agttaactaccgagggggtaaaaacgtcatttactcgtgtggcaca 34234547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 44052292 - 44052336
Alignment:
Q  190 ttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcacaa 234  Q
    ||||||||||  || |||||||||||||||||||||||| |||||    
T  44052292 ttaactaccgagggggcaaaaacgtcatttactcgtgtgccacaa 44052336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 17688357 - 17688250
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgt 225  Q
    |||||||| ||||||||||||| |||||||| |||||| ||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| ||||    
T  17688357 cgtcggcagttaactgccgaagaaacttcggtagttaactgcagccggttccaaacttcagtagttaactaccgcaggagcaaaaacgtcatttattcgt 17688258  T
Q  226 gtggcaca 233  Q
    ||||||||    
T  17688257 gtggcaca 17688250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 28138287 - 28138392
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgt 225  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||  ||||||  ||||||||||||||||||||    
T  28138287 cgtcggcagttaactgccgaaggaacttcgggagttaactgcagccggttccaaacatcggtagttaactgtcgcagggacaaaaacgtcatttactcgt 28138386  T
Q  226 gtggca 231  Q
    ||||||    
T  28138387 gtggca 28138392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 28137928 - 28137820
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgt 225  Q
    |||||||| ||||||||||||||||||||||||||||| |||| || ||| ||||||||  ||||||||| | | | | |||||||||||||||||||||    
T  28137928 cgtcggcagttaactgccgaaggaacttcgggagttaactgcaaccagtttcaaacttcagtagttaactgctgtaagggcaaaaacgtcatttactcgt 28137829  T
Q  226 gtggcacaa 234  Q
    |||||||||    
T  28137828 gtggcacaa 28137820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 17688778 - 17688865
Alignment:
Q  144 gaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggca 231  Q
    ||||||| ||||| |||||| ||| ||| ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||    
T  17688778 gaaggaatttcggtagttaactgccgccagttccaaacttcggtagttaactaccgcaggggcaaaaacgtcatttacacgtgtggca 17688865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 39378343 - 39378422
Alignment:
Q  153 tcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcac 232  Q
    |||| |||||| |||||||| |||||||||||| |||||||||||||||   ||||||||||||||||||||||||||||    
T  39378343 tcggcagttaactgcagccgattccaaacttcggtagttaactaccgcaaaggcaaaaacgtcatttactcgtgtggcac 39378422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 39377721 - 39377665
Alignment:
Q  177 caaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcaca 233  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  39377721 caaacttcgatagttaactaccgcagaggcaaaaacgtcatttactcgtgtggcaca 39377665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 43978122 - 43978197
Alignment:
Q  128 tcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcagg 203  Q
    |||||| ||||||| |||||||||||||  |||||| |||||||| || ||||||||| |||||||||||||||||    
T  43978122 tcggcagttaactgtcgaaggaacttcgatagttaactgcagccgatttcaaacttcggtagttaactaccgcagg 43978197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 23346799 - 23346744
Alignment:
Q  178 aaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcacaa 234  Q
    ||||||||  |||||||| ||| ||| ||||||||||||||||||||||||||||||    
T  23346799 aaacttcggcagttaactgccgaagg-gcaaaaacgtcatttactcgtgtggcacaa 23346744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 43870175 - 43870231
Alignment:
Q  178 aaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcacaa 234  Q
    ||||||||  |||||||| |||  || ||||||||||||||||||||||||||||||    
T  43870175 aaacttcggcagttaactgccgatggggcaaaaacgtcatttactcgtgtggcacaa 43870231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 23347382 - 23347436
Alignment:
Q  178 aaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcaca 233  Q
    ||||||||  |||||||| ||| ||| |||||||||||||||||||||||||||||    
T  23347382 aaacttcggcagttaactgccgaagg-gcaaaaacgtcatttactcgtgtggcaca 23347436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 43977666 - 43977587
Alignment:
Q  125 ccgtcggcaattaactgccgaaggaacttcgggagttaattgcagccgg-ttccaaacttcgatagttaactaccgcagg 203  Q
    |||| |||| ||||||||||||| || ||||| |||||| ||||||||| ||| |||||||| |||||| || |||||||    
T  43977666 ccgttggcagttaactgccgaagaaatttcggtagttaactgcagccggtttcaaaacttcggtagttagctgccgcagg 43977587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 13862989 - 13863027
Alignment:
Q  130 ggcaattaactgccgaaggaacttcgggagttaattgca 168  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  13862989 ggcagttaactgccgaaggaacttcgggagttaactgca 13863027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 432166 - 432097
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaact 195  Q
    |||||||| ||||||| ||||| ||||| |  ||||||||||| ||||||  |||||||| |||||||||    
T  432166 cgtcggcagttaactgtcgaagaaactttgatagttaattgcaaccggttttaaacttcggtagttaact 432097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 3943246 - 3943298
Alignment:
Q  178 aaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggca 231  Q
    ||||||||  |||||||| ||| ||| |||||||||||||||||||||||||||    
T  3943246 aaacttcggcagttaactgccg-aggagcaaaaacgtcatttactcgtgtggca 3943298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 16340546 - 16340623
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcagg 203  Q
    |||||||| |||||||||||||   |||| | |||||| |||| ||||||||  |||||| ||||||||| |||||||    
T  16340546 cgtcggcagttaactgccgaagtttcttcagtagttaactgcaaccggttccttacttcggtagttaactgccgcagg 16340623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 7190005 - 7190060
Alignment:
Q  178 aaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcacaa 234  Q
    ||||||||  |||||||| ||| ||| |||||||||| |||||||||||||||||||    
T  7190005 aaacttcggcagttaactgccg-aggggcaaaaacgtaatttactcgtgtggcacaa 7190060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 10825237 - 10825181
Alignment:
Q  178 aaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcacaa 234  Q
    |||||||| |||||||||||||  || |||||||||| ||||||| || ||||||||    
T  10825237 aaacttcggtagttaactaccgagggagcaaaaacgttatttacttgtatggcacaa 10825181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 33667836 - 33667788
Alignment:
Q  128 tcggcaattaactgccgaaggaacttcgggagttaattgcagccggttc 176  Q
    |||||| |||||||||||||||| ||||  |||||| ||||||||||||    
T  33667836 tcggcacttaactgccgaaggaatttcgatagttaactgcagccggttc 33667788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 36185558 - 36185665
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgt 225  Q
    |||||||| ||||||||||||||| |||||| |||||| |||||||||||||||| |||| |||| |||| ||||||| |||||||||||||||||||||    
T  36185558 cgtcggcagttaactgccgaaggagcttcggtagttaactgcagccggttccaaatttcggtagtgaactgccgcaggggcaaaaacgtcatttactcgt 36185657  T
Q  226 gtggcaca 233  Q
    ||||||||    
T  36185658 gtggcaca 36185665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 40323665 - 40323740
Alignment:
Q  158 agttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcaca 233  Q
    |||||| ||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  40323665 agttaactgcagccggttccaaacttcggtagttaactgccgcaggggcaaaaacgtcatttacttgtgtggcaca 40323740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 4997829 - 4997906
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcagg 203  Q
    ||||||||||||||||||||||||||||||  |||||| |||||||| || ||||||||| |||||| ||||||||||    
T  4997829 cgtcggcaattaactgccgaaggaacttcgatagttaactgcagccgatttcaaacttcggtagttagctaccgcagg 4997906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 46089054 - 46089004
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttc 176  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  46089054 cgtcggcagttaactgccgaaggaacttcgggagttaactgcagccggttc 46089004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 36185220 - 36185153
Alignment:
Q  166 gcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcacaa 234  Q
    |||||||||||||||||||| ||||||||| ||||||| | |||||  |||||||||||||||||||||    
T  36185220 gcagccggttccaaacttcggtagttaactgccgcagg-gtaaaaatatcatttactcgtgtggcacaa 36185153  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 35200761 - 35200840
Alignment:
Q  125 ccgtcggcaattaactgccgaaggaacttcgggagttaattgcagccgg-ttccaaacttcgatagttaactaccgcagg 203  Q
    ||||||||| ||||||| ||||| |||||||| |||||| ||||||||| ||| |||||||| ||| ||||| |||||||    
T  35200761 ccgtcggcagttaactgtcgaagaaacttcggtagttaactgcagccggtttcaaaacttcggtagctaactgccgcagg 35200840  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 4997425 - 4997357
Alignment:
Q  128 tcggcaattaactgccgaaggaacttcgggagttaattgcagccgg-ttccaaacttcgatagttaact 195  Q
    |||||| ||||||||||||| || ||||| |||||| || |||||| ||| |||||||| |||||||||    
T  4997425 tcggcacttaactgccgaagaaatttcggtagttaactgtagccggtttcaaaacttcggtagttaact 4997357  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 40323284 - 40323232
Alignment:
Q  181 cttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcaca 233  Q
    ||||| ||||||| | ||||||| ||||||| ||||||||||| |||||||||    
T  40323284 cttcggtagttaattgccgcaggggcaaaaatgtcatttactcatgtggcaca 40323232  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 48194640 - 48194676
Alignment:
Q  191 taactaccgcaggtgcaaaaacgtcatttactcgtgt 227  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  48194640 taactaccgaaggggcaaaaacgtcatttactcgtgt 48194676  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 33304964 - 33305070
Alignment:
Q  128 tcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgt 227  Q
    |||||| ||||||||||||||||||||||  ||||| ||||||||||||||||||||| ||||||||| |||||||  |||||||||||||||||||| |    
T  33304964 tcggcagttaactgccgaaggaacttcggttgttaactgcagccggttccaaacttcggtagttaactgccgcagggacaaaaacgtcatttactcgtat 33305063  T
Q  228 ggcacaa 234  Q
    |||||||    
T  33305064 ggcacaa 33305070  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 54203570 - 54203495
Alignment:
Q  128 tcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcagg 203  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| | |||||||    
T  54203570 tcggcagttaactgccgaaggaacttcgggagttaactgcagccggttccaaactttggtagttaattgccgcagg 54203495  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 5136630 - 5136550
Alignment:
Q  153 tcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcaca 233  Q
    |||| |||||| |||||||||||||||| |||| |||||||||  |||||| |||||||||||||||||| ||||||||||    
T  5136630 tcggtagttaactgcagccggttccaaatttcggtagttaactgtcgcaggggcaaaaacgtcatttacttgtgtggcaca 5136550  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 5138296 - 5138376
Alignment:
Q  153 tcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcaca 233  Q
    |||| |||||| || ||| |||||||||||||| |||||||||  || ||| |||||||||||||||||||||||||||||    
T  5138296 tcggcagttaactgtagctggttccaaacttcggtagttaactgtcgtaggggcaaaaacgtcatttactcgtgtggcaca 5138376  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 3350017 - 3350092
Alignment:
Q  128 tcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcagg 203  Q
    |||||| ||||||| |||||||||||||| |||||| |||||||| || ||||||||| ||||||||||| |||||    
T  3350017 tcggcagttaactgtcgaaggaacttcggtagttaactgcagccgatttcaaacttcggtagttaactactgcagg 3350092  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 44687470 - 44687553
Alignment:
Q  143 cgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtg 226  Q
    ||||||||||||   |||||| ||||||| |||| |||||||| |||||||||  |||||  ||||||||||||||||||||||    
T  44687470 cgaaggaacttcaatagttaactgcagccagttctaaacttcggtagttaactgtcgcagaggcaaaaacgtcatttactcgtg 44687553  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 1388117 - 1388175
Alignment:
Q  144 gaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcag 202  Q
    ||||||||||||| |||||| |||||||| |||||||||||| ||||||||| ||||||    
T  1388117 gaaggaacttcggtagttaactgcagccgattccaaacttcggtagttaactgccgcag 1388175  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 13742788 - 13742715
Alignment:
Q  158 agttaattgcagccggttccaaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggca 231  Q
    |||||| ||||||||||| ||||||||| |||||||||  |||||| | |||||||||||||| |||| |||||    
T  13742788 agttaactgcagccggtttcaaacttcggtagttaactgtcgcaggagtaaaaacgtcatttattcgtatggca 13742715  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 3349564 - 3349486
Alignment:
Q  125 ccgtcggcaattaactgccgaaggaacttcgggagttaattgcagccgg-ttccaaacttcgatagttaactaccgcag 202  Q
    ||||||||| ||||||||||||| || ||||| |||||| ||||||||| ||| |||||||| |||||| || ||||||    
T  3349564 ccgtcggcagttaactgccgaagaaatttcggtagttaactgcagccggtttcaaaacttcggtagttagctgccgcag 3349486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 55122110 - 55122160
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttc 176  Q
    |||||||| |||||||| |||||||||||||||||||| |||| |||||||    
T  55122110 cgtcggcatttaactgctgaaggaacttcgggagttaactgcaaccggttc 55122160  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 43476210 - 43476154
Alignment:
Q  178 aaacttcgatagttaactaccgcaggtgcaaaaacgtcatttactcgtgtggcacaa 234  Q
    ||||||||  |||||||| |||  || ||||||||||||||||||||||||||||||    
T  43476210 aaacttcggcagttaacttccgagggggcaaaaacgtcatttactcgtgtggcacaa 43476154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 44685933 - 44685870
Alignment:
Q  127 gtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagt 190  Q
    ||||||| |||||||| |||| || ||||| |||||| ||||||||||| ||||||||| ||||    
T  44685933 gtcggcagttaactgctgaagaaatttcggtagttaactgcagccggtttcaaacttcggtagt 44685870  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 11510310 - 11510260
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttc 176  Q
    |||||||||||||||| ||||||||||||  ||||||| |||||| |||||    
T  11510310 cgtcggcaattaactgtcgaaggaacttcaagagttaactgcagctggttc 11510260  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 55121666 - 55121616
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaattgcagccggttc 176  Q
    |||||||| |||||||||||||||||||||| ||||||  ||| |||||||    
T  55121666 cgtcggcagttaactgccgaaggaacttcggtagttaaccgcaaccggttc 55121616  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 18746597 - 18746657
Alignment:
Q  135 ttaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaact 195  Q
    |||||||||||||||| ||||| |||||| ||| |||| |||   ||||||||||||||||    
T  18746597 ttaactgccgaaggaatttcggtagttaactgccgccgattctttacttcgatagttaact 18746657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 16962 - 16887
Alignment:
Q  128 tcggcaattaactgccgaaggaacttcgggagttaattgcagccggttccaaacttcgatagttaactaccgcagg 203  Q
    |||||| ||||||||||||| |||||||| |||||| |||| |||||||||||||||| |||||||||||||||||    
T  16962 tcggcagttaactgccgaagaaacttcggtagttaactgcaaccggttccaaacttcggtagttaactaccgcagg 16887  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 31689022 - 31689059
Alignment:
Q  126 cgtcggcaattaactgccgaaggaacttcgggagttaa 163  Q
    |||||||| |||||||||||||||||||||||||||||    
T  31689022 cgtcggcagttaactgccgaaggaacttcgggagttaa 31689059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 40900623 - 40900664
Alignment:
Q  128 tcggcaattaactgccgaaggaacttcgggagttaattgcag 169  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  40900623 tcggcagttaactgccgaaggaacttcggtagttaattgcag 40900664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 30837151 - 30837197
Alignment:
Q  149 aacttcgggagttaattgcagccggttccaaacttcgatagttaact 195  Q
    |||||||  ||||||||||| ||||||||||||||| ||||||||||    
T  30837151 aacttcgatagttaattgcaaccggttccaaacttcaatagttaact 30837197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 44674157 - 44674128
Alignment:
Q  205 gcaaaaacgtcatttactcgtgtggcacaa 234  Q
    ||||||||||||||||||||||||||||||    
T  44674157 gcaaaaacgtcatttactcgtgtggcacaa 44674128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 51492064 - 51492035
Alignment:
Q  205 gcaaaaacgtcatttactcgtgtggcacaa 234  Q
    ||||||||||||||||||||||||||||||    
T  51492064 gcaaaaacgtcatttactcgtgtggcacaa 51492035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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