View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0693_low_34 (Length: 245)
Name: NF0693_low_34
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0693_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1390704 - 1390924
Alignment:
| Q |
1 |
ccatttgttctgtttgtaatttccttttctttttaaaggaaatgtctccagtgtttcttccgtgtttgctttcggattttgaaatgcaaatagatggata |
100 |
Q |
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| T |
1390704 |
ccatttgttctgtttgtaatttccttttctttttaaaggaaatgtctccagtgtttcttccgtgtttgctttcggattttgaaatgcaaatagatggata |
1390803 |
T |
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| Q |
101 |
agagttaattaatgaaatggtacttttattcattctcaaattagtattctctattctttttatatcgtaaatttgattgtttcttaatcttaactgtgga |
200 |
Q |
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| T |
1390804 |
agagttaattaatgaaatggtacttttattcattctcaaattagtattatctattctttttatatcgtaaatttgtttgtttcttaatcttaactgtgga |
1390903 |
T |
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| Q |
201 |
gcaagtagtctatgagattat |
221 |
Q |
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|||||||||||||||| |||| |
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| T |
1390904 |
gcaagtagtctatgaggttat |
1390924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 1374411 - 1374572
Alignment:
| Q |
3 |
atttgttctgtttgtaatttccttttcttttta-aaggaaatgtc-tccagtgtttcttccgtgtttgctttcggattttgaaatgcaaatagatggata |
100 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||| | | |||||| ||| || || |||||||||||| |||||||||| |||||||| |
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| T |
1374411 |
atttgttctgtttgtaatttccttttatttttttaaggaaatgtcgtactgtgttt-ttcagttttacctttcggattttaaaatgcaaatggatggata |
1374509 |
T |
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| Q |
101 |
agagttaattaatgaaatggtacttttattcattctcaaattagtattctctattctttttat |
163 |
Q |
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| T |
1374510 |
agagttgataaatgaaatggcacttctattgattctcaaattaatattatctattgtttttat |
1374572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 1358869 - 1358946
Alignment:
| Q |
68 |
gctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcattctcaaattagta |
146 |
Q |
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| T |
1358869 |
gctttcggatttc-aaatgcaaatgtatggataagagttaataaatgaaatggtacttttattcattctgaaattagta |
1358946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 1350995 - 1351072
Alignment:
| Q |
68 |
gctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcattctcaaattagta |
146 |
Q |
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|||||||||||| |||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||| |||||| |
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| T |
1350995 |
gctttcggatttcaaaatgcaaatgtatggataagagttaataaatgaaatggtaccttt-ttcattctcaagttagta |
1351072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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