View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0693_low_36 (Length: 242)

Name: NF0693_low_36
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0693_low_36
NF0693_low_36
[»] chr5 (8 HSPs)
chr5 (20-242)||(3208945-3209167)
chr5 (20-242)||(3202971-3203193)
chr5 (20-229)||(3216906-3217115)
chr5 (152-188)||(3232106-3232142)
chr5 (154-187)||(3177901-3177934)
chr5 (154-187)||(3240906-3240939)
chr5 (152-188)||(3221873-3221909)
chr5 (152-188)||(3226855-3226891)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 3209167 - 3208945
Alignment:
Q  20 caagcttcttggggttacaacaaaatcaagacttgtggggaaattccaatcaaggtaaagggatcataattggaatcgtcgacacaggaataaccctctc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3209167 caagcttcttggggttacaacaaaatcaagacttgtggggaaattccaatcaaggtaaagggatcataattggaatcgtcgacacaggaataaccctctc 3209068  T
Q  120 acatccttccttttctgatgaggggatgccttcaccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcatt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3209067 acatccttccttttctgatgaggggatgccttcaccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcatt 3208968  T
Q  220 ggagcaaggacctttgtaaattc 242  Q
    |||||||||||||||||||||||    
T  3208967 ggagcaaggacctttgtaaattc 3208945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 3203193 - 3202971
Alignment:
Q  20 caagcttcttggggttacaacaaaatcaagacttgtggggaaattccaatcaaggtaaagggatcataattggaatcgtcgacacaggaataaccctctc 119  Q
    |||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||    
T  3203193 caagcttcttggggttgcaacagaatcaagaattgtggggaaattccaatcaaggtaaagggatcataattggaatgctggacacaggaataaccctctc 3203094  T
Q  120 acatccttccttttctgatgaggggatgccttcaccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcatt 219  Q
    ||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3203093 acatccttccttttccgatgagggaatgccttctccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcatt 3202994  T
Q  220 ggagcaaggacctttgtaaattc 242  Q
    |||||||||| | | ||||||||    
T  3202993 ggagcaaggaacatcgtaaattc 3202971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 3217115 - 3216906
Alignment:
Q  20 caagcttcttggggttacaacaaaatcaagacttgtggggaaattccaatcaaggtaaagggatcataattggaatcgtcgacacaggaataaccctctc 119  Q
    |||||||||||||||| ||||| | |||||  || |||  |||||||||||  |||||||||||||||||||||||| | |||||||||||| |||||||    
T  3217115 caagcttcttggggttgcaacagagtcaaggattatggataaattccaatctcggtaaagggatcataattggaatcctggacacaggaatatccctctc 3217016  T
Q  120 acatccttccttttctgatgaggggatgccttcaccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcatt 219  Q
     ||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||    
T  3217015 ccatccttccttttctgacgagggaatgccctctccacctgcaaaatggaatggccactgtgaattcacaggggaaaggatttgtaacaagaagctcatt 3216916  T
Q  220 ggagcaagga 229  Q
    ||||||||||    
T  3216915 ggagcaagga 3216906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 3232142 - 3232106
Alignment:
Q  152 caccacctgcaaaatggaatggccattgtgaattcac 188  Q
    ||||||||||||||||||| |||||||||||||||||    
T  3232142 caccacctgcaaaatggaaaggccattgtgaattcac 3232106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 3177901 - 3177934
Alignment:
Q  154 ccacctgcaaaatggaatggccattgtgaattca 187  Q
    ||||||||||||||||| ||||||||||||||||    
T  3177901 ccacctgcaaaatggaaaggccattgtgaattca 3177934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 3240939 - 3240906
Alignment:
Q  154 ccacctgcaaaatggaatggccattgtgaattca 187  Q
    ||||||||||||||||| ||||||||||||||||    
T  3240939 ccacctgcaaaatggaaaggccattgtgaattca 3240906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 3221909 - 3221873
Alignment:
Q  152 caccacctgcaaaatggaatggccattgtgaattcac 188  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  3221909 caccacctgcaaaatggaaaggccattgcgaattcac 3221873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 3226891 - 3226855
Alignment:
Q  152 caccacctgcaaaatggaatggccattgtgaattcac 188  Q
    ||||||||||||||||||| || ||||||||||||||    
T  3226891 caccacctgcaaaatggaaaggtcattgtgaattcac 3226855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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