View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0693_low_41 (Length: 209)
Name: NF0693_low_41
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0693_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 42079257 - 42079062
Alignment:
| Q |
1 |
cttcgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
42079257 |
cttcgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaa-gaaatatgctatgaatattatagaagaaacatgtcta |
42079159 |
T |
|
| Q |
101 |
ttgaatgtcaagccaattgatattcacatggatccaaatgtcaaacttcaacctaataaa-gggagcctctatcatattcaataagatataataatt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||| |||| |
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| T |
42079158 |
ttgaatgtcaagccaattgatattcacatggatccaaatgtcagacttcaacctaataaaggggagcctctatcagattcaataagatataagaatt |
42079062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 23519737 - 23519923
Alignment:
| Q |
4 |
cgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattg |
103 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| ||||| | |||||||| |||||||| |
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| T |
23519737 |
cgttactttttgggtattgaggtagcccaatccaaggatggtattgtaatttcac-aaaggaaatacgctatggatattcttgaagaaactggtctattg |
23519835 |
T |
|
| Q |
104 |
aatgtcaagccaattgatattcacatggatccaaatgtcaaacttcaac-ctaataaagggagcctctatcatattcaataagatata |
190 |
Q |
| |
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| | ||||||| |||||| || ||||||||||||||||| |||| || |||| ||||||||||||||||||| |||||||| |
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|
| T |
23519836 |
atttccaagccagttgatactcctatggatccaaatgtcaagcttctacaaaaataggaggagcctctatcatattcaggaagatata |
23519923 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 41489376 - 41489191
Alignment:
| Q |
4 |
cgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattg |
103 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| | ||||||||| |||||||| |
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| T |
41489376 |
cgttactttttgggtattgatgtagcccaatccaaggatggtattgtaatttcacaaag-gaaatatgctttggatattcttgaagaaacaggtctattg |
41489278 |
T |
|
| Q |
104 |
aatgtcaagccaattgatattcacatggatccaaatgtcaaacttcaacctaat-aaagggagcctctatcatattcaataagatat |
189 |
Q |
| |
|
|||| |||||| ||||||| || |||||||||||||||||||||| ||||||| || |||||||| ||||| ||||| ||||||| |
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|
| T |
41489277 |
aatgccaagccgattgatactccgatggatccaaatgtcaaacttctacctaatcaaggggagcctttatcagattcaggaagatat |
41489191 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 29806937 - 29806752
Alignment:
| Q |
5 |
gttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattga |
104 |
Q |
| |
|
||||||| || ||||| |||||||||||||||| |||||||||| | |||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
29806937 |
gttactttttgggtatcgaggtagcccaatccatggatggtattatgatttcacaaag-gaaatatgctatgaatattcatgaagaaacatgtctattga |
29806839 |
T |
|
| Q |
105 |
atgtcaagccaattgatattcacatggatccaaatgtcaaacttcaacctaataaag-ggagcctctatcatattcaataagatata |
190 |
Q |
| |
|
||| ||| ||| |||||| || |||||||||||||||||| ||| ||||||| | | ||||||||||||| |||||| |||||||| |
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|
| T |
29806838 |
atgccaaaccagttgatactcctatggatccaaatgtcaaatttctacctaatcaggaggagcctctatcagattcaagaagatata |
29806752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 45434470 - 45434323
Alignment:
| Q |
1 |
cttcgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtcta |
100 |
Q |
| |
|
|||||||| || || |||||||||||||||||||| ||||||||| | ||||| |||||| | |||||||||||| ||||| | |||||||||||||| |
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|
| T |
45434470 |
cttcgttattttttgggtattgaggtagcccaatctaaggatggtctagtaatatcacaacga-aaatatgctatggatattcttgaagaaacatgtctt |
45434372 |
T |
|
| Q |
101 |
ttgaatgtcaagccaattgatattcacatggatccaaatgtcaaacttc |
149 |
Q |
| |
|
||||| | ||||||| |||||| || |||||||| ||||||||||||| |
|
|
| T |
45434371 |
ttgaacgccaagccagttgatactcctatggatcctaatgtcaaacttc |
45434323 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 16477364 - 16477224
Alignment:
| Q |
16 |
ggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattgaatgtcaagcca |
115 |
Q |
| |
|
||||||||||||| | ||||||| |||| |||||||||||||| ||| ||||| | |||| ||||| | |||||||||| | |||||||| ||||||| |
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| T |
16477364 |
ggtattgaggtagtctaatccaaagatgatattgtaatttcac-aaaggaaatgttgtatgtatattcttgaagaaacatataaattgaatgccaagcca |
16477266 |
T |
|
| Q |
116 |
attgatattcacatggatccaaatgtcaaacttcaacctaat |
157 |
Q |
| |
|
||||||| ||| |||| ||||||||| |||| ||||||| |
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|
| T |
16477265 |
attgatactcatgcggatgtaaatgtcaatcttctacctaat |
16477224 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 20187605 - 20187432
Alignment:
| Q |
1 |
cttcgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtcta |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||| |||| | |||| |||||||||| |
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|
| T |
20187605 |
cttcgttactttctaggtattgaggtagcccaatccaaggatgatattgtaagttcac-aaaggaaatatgctatggttattcttgaagtaacatgtcta |
20187507 |
T |
|
| Q |
101 |
ttgaatgtcaagccaattgatattcacatggatccaaatgtcaaacttcaacctaa-taaagggagcctctatca |
174 |
Q |
| |
|
||||||| ||| ||||||||| ||| ||| ||||||||||||||| || |||||| || |||||||||||||| |
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|
| T |
20187506 |
ttgaatgctaagtcaattgatactcatatgaatccaaatgtcaaacgtctacctaattagggggagcctctatca |
20187432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 6739032 - 6739172
Alignment:
| Q |
16 |
ggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattgaatgtcaagcca |
115 |
Q |
| |
|
|||||||||||| |||||||||| |||||| || |||| | | | ||||||||||| ||| ||||| | ||||||||||||||||| |||||||| || |
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|
| T |
6739032 |
ggtattgaggtaacccaatccaatgatggtcttctaatatga-agaaagaaatatgttatagatattcttgaagaaacatgtctatttaatgtcaa-aca |
6739129 |
T |
|
| Q |
116 |
attgatattcacatggatccaaatgtcaaacttcaacctaata |
158 |
Q |
| |
|
|||||| || || |||||||||||||| ||| |||||||| |
|
|
| T |
6739130 |
gttgatactcttataaatccaaatgtcaaaattctacctaata |
6739172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 14167164 - 14166978
Alignment:
| Q |
4 |
cgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattg |
103 |
Q |
| |
|
|||||||| || | |||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| | |||||||||||| ||||| |
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|
| T |
14167164 |
cgttactttttggatattgaggtaacccaatccatggatggtattgtaatttcacaaag-gaaatatgctatggatattcttgaagaaacatgtatattg |
14167066 |
T |
|
| Q |
104 |
aatgtcaagccaattgatattcacatggatccaaatgtcaaacttcaacctaataa-agggagcctctatcatattcaataagatataa |
191 |
Q |
| |
|
|||| ||||||| |||||| || |||||||||||||| ||| || ||||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
14167065 |
aatgccaagccagttgatactcctatggatccaaatgttaaa-atctacctaataagggggagcctctatcagattcaggaagatataa |
14166978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 55255570 - 55255632
Alignment:
| Q |
86 |
gaagaaacatgtctattgaatgtcaagccaattgatattcacatggatccaaatgtcaaactt |
148 |
Q |
| |
|
||||||||| || ||||||||| ||||||| |||||| || ||||||| ||||||||||||| |
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|
| T |
55255570 |
gaagaaacaggtatattgaatgccaagccagttgatactcctatggatctaaatgtcaaactt |
55255632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 9e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 19126453 - 19126569
Alignment:
| Q |
5 |
gttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattga |
104 |
Q |
| |
|
||||||| || ||||||||| |||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
19126453 |
gttactttttgggtattgagatagctcaatccaaggatggtgttgtaatttcacaagg-gaaatatgctatgaatattcttgaagaaacatgtctattga |
19126551 |
T |
|
| Q |
105 |
atgtcaagccaattgata |
122 |
Q |
| |
|
||| |||||||||||||| |
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|
| T |
19126552 |
atgccaagccaattgata |
19126569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 14166275 - 14166128
Alignment:
| Q |
1 |
cttcgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtcta |
100 |
Q |
| |
|
|||||||| || || |||||||||||||||||||| ||||||||| | ||||| |||||| | |||||||||||| ||||| | ||||||||| |||| |
|
|
| T |
14166275 |
cttcgttattttttgggtattgaggtagcccaatctaaggatggtctagtaatatcacaacga-aaatatgctatggatattcttgaagaaacaggtctt |
14166177 |
T |
|
| Q |
101 |
ttgaatgtcaagccaattgatattcacatggatccaaatgtcaaacttc |
149 |
Q |
| |
|
||||| | ||||||| |||||| || || | ||| ||||||||||||| |
|
|
| T |
14166176 |
ttgaacgccaagccagttgatactcctattgttcctaatgtcaaacttc |
14166128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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