View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0693_low_42 (Length: 207)

Name: NF0693_low_42
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0693_low_42
NF0693_low_42
[»] chr7 (7 HSPs)
chr7 (1-184)||(31216031-31216214)
chr7 (41-181)||(31058837-31058977)
chr7 (41-181)||(31140640-31140780)
chr7 (59-181)||(31184379-31184501)
chr7 (44-181)||(31103284-31103421)
chr7 (124-181)||(31159555-31159612)
chr7 (132-181)||(31241666-31241715)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 31216031 - 31216214
Alignment:
Q  1 tgaaaatgaaattcaagctttgacagaaatcaggcatcgtaacatcataaagctctatggatattgccgacattcaagattctcatttttggtttataag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31216031 tgaaaatgaaattcaagctttgacagaaatcaggcatcgtaacatcataaagctctatggatattgccgacattcaagattctcatttttggtttataag 31216130  T
Q  101 ttcttggaaggtggaactttgactcaaatgttaaacaatgacacacaagccattgcatttgattgggaaaagagggtgaatatt 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31216131 ttcttggaaggtggaactttgactcaaatgttaaacaatgacacacaagccattgcatttgattgggaaaagagggtgaatatt 31216214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 41 - 181
Target Start/End: Original strand, 31058837 - 31058977
Alignment:
Q  41 aacatcataaagctctatggatattgccgacattcaagattctcatttttggtttataagttcttggaaggtggaa-ctttgactcaaatgttaaacaat 139  Q
    ||||||||||| ||  |||||| ||||  |||||| | |||||| ||||||||||| ||||||||||||||||||| ||| || ||||||  ||||||||    
T  31058837 aacatcataaaacttcatggattttgctcacattctaaattctcgtttttggtttacaagttcttggaaggtggaagcttaga-tcaaatactaaacaat 31058935  T
Q  140 gacacacaagccattgcatttgattgggaaaagagggtgaat 181  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  31058936 gacacacaagccgttgcatttgattgggaaaagagggtgaat 31058977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 181
Target Start/End: Original strand, 31140640 - 31140780
Alignment:
Q  41 aacatcataaagctctatggatattgccgacattcaagattctcatttttggtttataagttcttggaaggtggaactttgactcaaatgttaaacaatg 140  Q
    ||||||||||||||  |||||| ||||  |||||| | |||||||||||||||||| |||||||||||||| ||||  ||   ||||||| |||||| ||    
T  31140640 aacatcataaagcttcatggattttgctcacattctaaattctcatttttggtttacaagttcttggaaggaggaagcttaggtcaaatgctaaacagtg 31140739  T
Q  141 acacacaagccattgcatttgattgggaaaagagggtgaat 181  Q
    | |||||||||| ||||||||||||||||||||||||||||    
T  31140740 atacacaagccactgcatttgattgggaaaagagggtgaat 31140780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 59 - 181
Target Start/End: Original strand, 31184379 - 31184501
Alignment:
Q  59 ggatattgccgacattcaagattctcatttttggtttataagttcttggaaggtggaa-ctttgactcaaatgttaaacaatgacacacaagccattgca 157  Q
    |||||||||| |||||| |  ||||||||||||||||| |||||| |||||||||||| ||| || ||||||  |||||||||| | |||||||||||||    
T  31184379 ggatattgccaacattctaagttctcatttttggtttacaagttcatggaaggtggaagcttaga-tcaaataataaacaatgaaaaacaagccattgca 31184477  T
Q  158 tttgattgggaaaagagggtgaat 181  Q
    ||||||||||||||||||||||||    
T  31184478 tttgattgggaaaagagggtgaat 31184501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 44 - 181
Target Start/End: Original strand, 31103284 - 31103421
Alignment:
Q  44 atcataaagctctatggatattgccgacattcaagattctcatttttggtttataagttcttggaaggtggaa-ctttgactcaaatgttaaacaatgac 142  Q
    |||||||||||  |||||| ||||  |||||| |  ||||||||||| ||||| |||||| |||||||||||| ||| || ||||||  ||||||||||     
T  31103284 atcataaagcttcatggattttgctcacattctaagttctcatttttagtttacaagttcatggaaggtggaagcttaga-tcaaatactaaacaatgaa 31103382  T
Q  143 acacaagccattgcatttgattgggaaaagagggtgaat 181  Q
    | |||||||||||||||||||||||||||||||||||||    
T  31103383 aaacaagccattgcatttgattgggaaaagagggtgaat 31103421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 31159555 - 31159612
Alignment:
Q  124 tcaaatgttaaacaatgacacacaagccattgcatttgattgggaaaagagggtgaat 181  Q
    ||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  31159555 tcaaatgctaaacagtgatacacaagccactgcatttgattgggaaaagagggtgaat 31159612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 31241666 - 31241715
Alignment:
Q  132 taaacaatgacacacaagccattgcatttgattgggaaaagagggtgaat 181  Q
    |||||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  31241666 taaacagtgatacacaagccactgcatttgattgggaaaagagggtgaat 31241715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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