View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0693_low_8 (Length: 435)
Name: NF0693_low_8
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0693_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 30 - 359
Target Start/End: Complemental strand, 3158023 - 3157693
Alignment:
| Q |
30 |
tccgggtggtgtctttattcttgctctattatgttgatatttctactttctgtgatggctcgtgggttcaaattatattcaccaagataaattcaaacat |
129 |
Q |
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| T |
3158023 |
tccgggtggtgtctttattcttgctctattatgttgatatttctactttctgtgatggctcgtgggttcaaattatattcaccaagataaattcaaacat |
3157924 |
T |
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| Q |
130 |
ctctttaatacattatttattgatttatgttcatttattggccagtaatattacttgaattttgaaaataaaataaag-aattatatttgtataaaattt |
228 |
Q |
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| T |
3157923 |
ctctttaatatattatttattgatttatgttcatttattggccagtaatattacttgaattttgaaaataaaataaagaaattatatttgtataaaattt |
3157824 |
T |
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| Q |
229 |
ttggacaattttatctcttatatacggattgtgtttttatttcatctcttcnnnnnnnnncctctcaattttaccaacattgtctttattaaatgaaaat |
328 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||| |
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| T |
3157823 |
ttggacaattttatctcttatacacggattgtgtttttatttcatctcttctttttttttcctctcaattttacctacattgtctttattaaaagaaaat |
3157724 |
T |
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| Q |
329 |
tatattaatgtcatttcatagttatcatatt |
359 |
Q |
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| T |
3157723 |
tatattaatgccatttcatagttatcatatt |
3157693 |
T |
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