View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0693_low_9 (Length: 395)
Name: NF0693_low_9
Description: NF0693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0693_low_9 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 23852442 - 23852836
Alignment:
| Q |
1 |
gtttatgatcactactgtgcatcttggttatgctgcagttcatcaagtctaatcctaacaaagaaggaatcatgttaagtacgaagaacaaattttgtgc |
100 |
Q |
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| T |
23852442 |
gtttatgatcactactgtgcatcttggttatgctgcagttcatcaagtctaattctaacaaagaaggaatcatgttaagtacgaagaacaaattttgtgc |
23852541 |
T |
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| Q |
101 |
cctcccaagaaaaacatcactcaggtaaaggttttggagcaatgaaagttttgaaacccaactgacatcatcagagtgtaaataagtattgaaactgaga |
200 |
Q |
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| T |
23852542 |
cctcccaagaaaaacatcactcaggtaaaggttttggagcaatgaaagttttgaaacccaactgacatcatcagagtgtaaataagtattgaaactgaga |
23852641 |
T |
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| Q |
201 |
tcaagaaaggacaattttgtgaggtttccaaggttatttgggatcttaccactcaaatgggagtcatagagagaaagaaattgtaactgattcatagaat |
300 |
Q |
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| T |
23852642 |
tcaagaaaggacaattttgtgaggtttccaaggttatttgggatcttaccactcaaatgggagtcatagagagaaagaaattgtaactgattcatagaat |
23852741 |
T |
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| Q |
301 |
ggataaactttggtattggacttgaattgaaattgtttccactaaggtccaaataactaggatacttgaactgtgaatgagcaggatggatatac |
395 |
Q |
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| T |
23852742 |
ggataaactttggtattggacttgaattgaaattgtttccactaaggtccaaataactaagatacttgaactgtgaatgagcaggatggatatac |
23852836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 359
Target Start/End: Original strand, 22619147 - 22619492
Alignment:
| Q |
14 |
actgtgcatcttggttatgctgcagttcatcaagtctaatcctaacaaagaaggaatcatgttaagtacgaagaacaaattttgtgccctcccaagaaaa |
113 |
Q |
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| T |
22619147 |
actgtgcatcttggttatgcttcagttcttcaattctaattctatcaaagaaggaagcatggtaagtaccttgaataaattttgtgccttcccaagaaaa |
22619246 |
T |
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| Q |
114 |
acatcactcaggtaaaggttttggagcaatgaaagttttgaaacccaactgacatcatcagagtgtaaataagtattgaaactgagatcaagaaaggaca |
213 |
Q |
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| T |
22619247 |
acatcactcaagtaaaggttttggagcaatgaaagttttgaaacccaatttacatcatcagagtgtaaataagaatttaaactgagatcaagaaagttca |
22619346 |
T |
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| Q |
214 |
attttgtgaggtttccaaggttatttgggatcttaccactcaaatgggagtcatagagagaaagaaattgtaactgattcatagaatggataaactttgg |
313 |
Q |
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| T |
22619347 |
attttgtgaggtttctaaggttatttgggattattccactcaaattggaatcagagatagaaaggaattttaactgattcattaaatggataaatgttgg |
22619446 |
T |
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| Q |
314 |
tattggacttgaattgaaattgtttccactaaggtccaaataacta |
359 |
Q |
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| T |
22619447 |
tattggacttgaatttaaattgtttccactaaggtctaaattacta |
22619492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 359
Target Start/End: Original strand, 23751754 - 23752099
Alignment:
| Q |
14 |
actgtgcatcttggttatgctgcagttcatcaagtctaatcctaacaaagaaggaatcatgttaagtacgaagaacaaattttgtgccctcccaagaaaa |
113 |
Q |
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||||||||||||||||||||| |||||| |||| |||||| ||| ||||||||||| |||| ||||||| ||| |||||||||||| ||||||||||| |
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| T |
23751754 |
actgtgcatcttggttatgcttcagttcttcaattctaattctatcaaagaaggaagcatggtaagtaccttgaataaattttgtgccttcccaagaaaa |
23751853 |
T |
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| Q |
114 |
acatcactcaggtaaaggttttggagcaatgaaagttttgaaacccaactgacatcatcagagtgtaaataagtattgaaactgagatcaagaaaggaca |
213 |
Q |
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| T |
23751854 |
acatcactcatttaaaggttttggagcaatgaaagttttgaaacccaatttacatcatcagagtgtaaataagaatttaaactgagatcaagaaagttca |
23751953 |
T |
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| Q |
214 |
attttgtgaggtttccaaggttatttgggatcttaccactcaaatgggagtcatagagagaaagaaattgtaactgattcatagaatggataaactttgg |
313 |
Q |
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||||||||||||||| ||||||||||||||| | |||||||||| ||| ||| ||| |||||| |||| |||||||||||| |||||||||| |||| |
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| T |
23751954 |
attttgtgaggtttctaaggttatttgggattattccactcaaattggaatcagagatagaaaggaattttaactgattcattaaatggataaatgttgg |
23752053 |
T |
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| Q |
314 |
tattggacttgaattgaaattgtttccactaaggtccaaataacta |
359 |
Q |
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| T |
23752054 |
tattggacttgaatttaaattgtttccactaaggtctaaattacta |
23752099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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