View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0694_high_4 (Length: 266)
Name: NF0694_high_4
Description: NF0694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0694_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 34729018 - 34729210
Alignment:
| Q |
43 |
aaaacaataggttttcattggatgtcagtcaatgtaaaactattttacaccaacactgtatatcctttaaatcctttattgaaggttaccaatatttgga |
142 |
Q |
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| T |
34729018 |
aaaacaataggttttcattggat----ctcaatgtaaaactattttacaccaacactgtatatcctttaaatcctttattgaaggttaccaatatttgga |
34729113 |
T |
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| Q |
143 |
aacagaaatgagatgaaaataattcccaaacaggctctacaatgttcaaaattaccactgcacattgacatatgacaaataaaatgacttttagtat |
239 |
Q |
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| T |
34729114 |
aacagaaatgagatgaaaataattcccaaacgggctctacaatgttcaaaattaccactgcactttgacatatgacaaataaaatgacttttagtat |
34729210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 34724851 - 34724896
Alignment:
| Q |
43 |
aaaacaataggttttcattggatgtcagtcaatgtaaaactattttacac |
92 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
34724851 |
aaaacaataggttttcattggatgttag----tgtaaaactattttacac |
34724896 |
T |
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