View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0694_low_1 (Length: 372)

Name: NF0694_low_1
Description: NF0694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0694_low_1
NF0694_low_1
[»] chr2 (1 HSPs)
chr2 (46-340)||(29946520-29946814)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 46 - 340
Target Start/End: Original strand, 29946520 - 29946814
Alignment:
Q  46 atataacagtttcagcacgaagttaaagctcatgataataacatttcaaaagccacttgagttcaaaatatacatgtataacgataataaaacaacacag 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  29946520 atataacagtttcagcacgaagttaaagctcatgataataacatttcaaaagccacttgaattcaaaatatacatgtataacgataataatacaacacag 29946619  T
Q  146 tcataatgacttatcaattagagaagaaaagattctaacttttgcaacccattttccatgtgtgcatccagcgacgatattactctcggcaactgctcca 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  29946620 tcataatgacttatcaattagagaagaaaagattctaacttttgcaacccattttccatgtgtgcatccagagacgatattactctcggcaactgctcta 29946719  T
Q  246 aaacctgtacaacaaaaccgaaaccattacacacacttcaaacgtttgctcacactcaacaacaacattacatcaattcaattacctgctctgtg 340  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  29946720 aaacctgtacaacaaaaccaaaaccattacacacacttcaaacgtttgctcacactcaacaacaacatttcatcaattcaattacctgctgtgtg 29946814  T

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