View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0694_low_11 (Length: 250)
Name: NF0694_low_11
Description: NF0694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0694_low_11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 36776368 - 36776124
Alignment:
| Q |
4 |
atgtcgaagaatatgaagtgttcaaatataatgatcgtaatttaagcatgatgacaagactgtcaaaacgagttatatagatgaaccttaaactataggt |
103 |
Q |
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| T |
36776368 |
atgtagaagaatatgaagtgttcaaatataatgatcgtaatttaagcatgatgacaagactgtcaaaacgagttatatagatgaaccttaaactataggt |
36776269 |
T |
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| Q |
104 |
tagttgtgtaattggcaataccatagacnnnnnnnnnnnnaaaatgatcaataataccatagacataaaagaaatataatacaacaataatttacaaata |
203 |
Q |
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| T |
36776268 |
tagttgtgtaattggcaataccatagac-ttttttgttttaaaatgatcaataataccatagacataaaagaaatataatacaacaataatttacaaata |
36776170 |
T |
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| Q |
204 |
tgataattttctctccctttccattatctttttaaaggagataaaat |
250 |
Q |
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| T |
36776169 |
tgataattttctctccctttccattatc-ttttaaaggagataaaat |
36776124 |
T |
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Back To:
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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 250
Target Start/End: Complemental strand, 36789045 - 36788949
Alignment:
| Q |
155 |
taataccatagacataaaagaaatata--atacaacaataatttacaaatatgataattttctc-tccctttccattatctttttaaaggagataaaat |
250 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| | |||||||||| |||||| ||||||||||||| |
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| T |
36789045 |
taataccatagacataaaagaaatatataatacaacaataatttacaaatatgatattttcctctttcctttccattttctttt--aaggagataaaat |
36788949 |
T |
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