View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0694_low_5 (Length: 296)
Name: NF0694_low_5
Description: NF0694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0694_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 24 - 285
Target Start/End: Complemental strand, 11811924 - 11811663
Alignment:
| Q |
24 |
atgtttttcatcaggtttagaaaattcaaactcaactacaaaagtaatactcactcaaaacagttcatcttatacacctcttttacaatcttccataaga |
123 |
Q |
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| T |
11811924 |
atgtttttcatcaggtttagaaaattcaaactcaactacaaaagtaatactcactcaaaacagttcatcttatacacctcttttacaatcttccataaga |
11811825 |
T |
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| Q |
124 |
aacaacagattcttagaaagttcagtaccaaaacctaaccttattgttattccaaatgatctattccaaatccaaaaaacaataatttgttcnnnnnnnc |
223 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11811824 |
aacaacagattcttagaaagttcagttccaaaaccttaccttattgttattccaaatgatctattccaaatccaaaaaacaataatttgttcaaaaaaac |
11811725 |
T |
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| Q |
224 |
aaggcctagaaataagagttaggagtggtggacatgactatgaaggtctttcttatgtctct |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11811724 |
aaggcctagaaataagagttaggagtggtggacatgactatgaaggtctttcttatgtctct |
11811663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 24 - 285
Target Start/End: Complemental strand, 11804180 - 11803919
Alignment:
| Q |
24 |
atgtttttcatcaggtttagaaaattcaaactcaactacaaaagtaatactcactcaaaacagttcatcttatacacctcttttacaatcttccataaga |
123 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| || |||||| |
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| T |
11804180 |
atgtttttcaccaggtttaaaaaattcaaactcaactacaaaagtaataatcactcaaaacagttcatcttatgcaccccttttacaatcatcaataaga |
11804081 |
T |
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| Q |
124 |
aacaacagattcttagaaagttcagtaccaaaacctaaccttattgttattccaaatgatctattccaaatccaaaaaacaataatttgttcnnnnnnnc |
223 |
Q |
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| T |
11804080 |
aaccaaagattcttagaaaattcggttccaaaacctaacctcattgtttttccaaatgacctatttcaaatccaaacaacaataatttgttcaaaaaaac |
11803981 |
T |
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| Q |
224 |
aaggcctagaaataagagttaggagtggtggacatgactatgaaggtctttcttatgtctct |
285 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11803980 |
aaggcctggaaataagaattaggagtggtggacatgactatgaaggtctttcttatgtctct |
11803919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 11917327 - 11917369
Alignment:
| Q |
242 |
ttaggagtggtggacatgactatgaaggtctttcttatgtctc |
284 |
Q |
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|||| ||||| |||||||||||||||||| ||||||||||||| |
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| T |
11917327 |
ttagaagtggaggacatgactatgaaggtgtttcttatgtctc |
11917369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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