View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0694_low_7 (Length: 284)
Name: NF0694_low_7
Description: NF0694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0694_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 190 - 272
Target Start/End: Complemental strand, 13934211 - 13934129
Alignment:
| Q |
190 |
atatatatatcattaagctcgtatttggttggtgtggttctatcatcttacatttgaatcataacaatctatcactcaagtat |
272 |
Q |
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| T |
13934211 |
atatatatatcattaagctcgtatttggttgatgtggttctatcatcttacatttgaattataacaatctatcattcaagtat |
13934129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 13934371 - 13934293
Alignment:
| Q |
29 |
ataaactacacaagtgattttgaaataagacaatttcgtcaaacacctttaggaccttgagtacacatacatacacacac |
108 |
Q |
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| T |
13934371 |
ataaactacacaagtgattttgaac-aagacaatttcgtcaaacacctttaggaccttgagtacacatacatacacacac |
13934293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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