View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0694_low_8 (Length: 273)
Name: NF0694_low_8
Description: NF0694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0694_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 19764865 - 19765054
Alignment:
| Q |
32 |
gattattcttcataaaacaataatgggttcttgagaaaacttgtaaaaatcaatcnnnnnnnnatattggggtgtttctgtttaatgcatttttattcaa |
131 |
Q |
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| T |
19764865 |
gattattcttcataaaacaataatgggttcttgagaaaacttgtaaaaatcaat--tttttttatattggggtgtttctgtttaatgcatttttattcaa |
19764962 |
T |
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| Q |
132 |
aaacgttggtgggttttgattattcttcatgaacaatcatgggttctagagaaaagttgtaaaaatcaaatttttatactatgttgatgatg |
223 |
Q |
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| T |
19764963 |
aaacgttggtgggttttgattattcttcataaacaatcataggttctagaaaaaagttgtaaaaatcaaatttttatactatgttgatgatg |
19765054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 19764853 - 19764923
Alignment:
| Q |
137 |
ttggtgggttttgattattcttcatgaa-caatcatgggttctagagaaaagttgtaaaaatcaaattttt |
206 |
Q |
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| T |
19764853 |
ttggtgggttttgattattcttcataaaacaataatgggttcttgagaaaacttgtaaaaatcaatttttt |
19764923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 34 - 223
Target Start/End: Original strand, 394318 - 394504
Alignment:
| Q |
34 |
ttattcttcataaaacaataatgggttcttgagaaaacttgtaaaaatcaatcnnnnnnnnatattggggtgtttctgtttaatgcatttttattcaaaa |
133 |
Q |
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| T |
394318 |
ttattcttcgtaaaacaataatgggttcttgagaaaacttttaaaaatcaa---attttttatattggggtgtttctgtttaatgcatttttattcaaaa |
394414 |
T |
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| Q |
134 |
acgttggtgggttttgattattcttcatgaacaatcatgggttctagagaaaagttgtaaaaatcaaatttttatactatgttgatgatg |
223 |
Q |
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| T |
394415 |
acgttggtgggttttgattattcttcatgaacaatcatgggttctagagaaaagttgtaaaaatcaaatttttatactatgttgatgatg |
394504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 394304 - 394374
Alignment:
| Q |
137 |
ttggtgggttttgattattcttcatgaa-caatcatgggttctagagaaaagttgtaaaaatcaaattttt |
206 |
Q |
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||||||||||||| ||||||||| | || |||| ||||||||| ||||||| || |||||||||||||||| |
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| T |
394304 |
ttggtgggttttgtttattcttcgtaaaacaataatgggttcttgagaaaacttttaaaaatcaaattttt |
394374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 394430 - 394481
Alignment:
| Q |
32 |
gattattcttcataaaacaataatgggttcttgagaaaacttgtaaaaatcaa |
84 |
Q |
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||||||||||||| || |||| ||||||||| ||||||| ||||||||||||| |
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| T |
394430 |
gattattcttcatgaa-caatcatgggttctagagaaaagttgtaaaaatcaa |
394481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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