View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0695_high_3 (Length: 382)
Name: NF0695_high_3
Description: NF0695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0695_high_3 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 6935865 - 6936242
Alignment:
| Q |
1 |
ccttgtaatagaattggttggaagggacggcaagggtgatagaattcgaagtaccctccatcaaactagagatgggcacgaccttacattctcgcaaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6935865 |
ccttgtaatagaattggttggaagggacggcaagggtgatagaattcgaagtaccctccatcaaactagagatgggcacgaccttacattctcgcaaatc |
6935964 |
T |
|
| Q |
101 |
tttataattgtttgtgagaaaagcgaggtgtgtagattgcttcttatggtgccttttgacgaagtctggatcggagattagggttttccatgacttgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6935965 |
tttataattgtttgtgagaaaagcgaggtgtgtagattgcttcttatggtgccttttgacgaagtctggatcggagattagggttttccatgacttgcaa |
6936064 |
T |
|
| Q |
201 |
acacacttcatcagcatcagagtttttacgtcaaggggggttacgactttgtcgataagttcgtcagggaggattatcagacgattgatattcatgagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6936065 |
acacacttcatcagcatcagagtttttacgtcaaggggcgttacgactttgtcgataagttcgtcagggaggattatcagacgattgatattcatgagaa |
6936164 |
T |
|
| Q |
301 |
cagtcctgttgttgagttggaagtgaaaaccctttggaattttttgtggaagaaaccctagaaggatattgttggaga |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
6936165 |
cagtcctgttgttgagttggaagtgaaaaccctttggaattttttgtggaagaaaccctagaaggatattggtggaga |
6936242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 130 - 364
Target Start/End: Original strand, 6922141 - 6922374
Alignment:
| Q |
130 |
gtgtagattgcttcttatggtgccttttgacgaagtctggatcggagattagggttttccatgacttgcaaacacacttcatcagcatcagagtttttac |
229 |
Q |
| |
|
||||||||||||||||| ||||| ||||| | ||||| ||||| |||||||||||||||| |||||| |||||||||||||| ||| |||| ||||| |
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|
| T |
6922141 |
gtgtagattgcttcttaaggtgcattttggcaaagtcgggatccaagattagggttttccaagacttggaaacacacttcatcgacattagagattttat |
6922240 |
T |
|
| Q |
230 |
gtcaaggggggttacgactttgtcgataagttcgtcagggaggattatcagacgattgatattcatgagaacagtcctgttgttg-agttggaagtgaaa |
328 |
Q |
| |
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||| ||| ||| ||||| | ||||||| |||||| ||||||||| |||| || |||||||||||||||||| ||||||| ||||| | |||||| |
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| T |
6922241 |
gtcgaggaacattaggacttcgacgataaggtcgtcatggaggattaccagaggagggatattcatgagaacagt-aggttgttgaagttgtacgtgaaa |
6922339 |
T |
|
| Q |
329 |
accctttggaattttttgtggaagaaaccctagaag |
364 |
Q |
| |
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|||| || ||| |||||||||||||||||||||||| |
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| T |
6922340 |
accc-ttcgaactttttgtggaagaaaccctagaag |
6922374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 130 - 304
Target Start/End: Original strand, 6948671 - 6948844
Alignment:
| Q |
130 |
gtgtagattgcttcttatggtgccttttgacgaagtctggatcggagattagggttttccatgacttgcaaacacacttcatcagcatcagagtttttac |
229 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |
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| T |
6948671 |
gtgtagattgcttcttaaggtgcattttggcgaagtagggatcggatattagggttttccatgacttgcaaacacacttcatcaacattagagattttac |
6948770 |
T |
|
| Q |
230 |
gtcaaggggggttacgactttgtcgataagttcgtcagggaggattatcagacgattgatattcatgagaacagt |
304 |
Q |
| |
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|| ||| |||| ||||| ||||||| |||||| |||| |||| |||| || |||||||||||||||||| |
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| T |
6948771 |
gt-gaggaacgttaggacttcaacgataaggtcgtcatggagaattaccagaggagggatattcatgagaacagt |
6948844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 130 - 304
Target Start/End: Original strand, 1986748 - 1986921
Alignment:
| Q |
130 |
gtgtagattgcttcttatggtgccttttgacgaagtctggatcggagattagggttttccatgacttgcaaacacacttcatcagcatcagagtttttac |
229 |
Q |
| |
|
||||||||||||| ||| ||||| ||||| |||||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |
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| T |
1986748 |
gtgtagattgctt-ttaaggtgcattttggcgaagtagggatgggatattagggttttccatgacttgcaaacacacttcatcaacattagagattttac |
1986846 |
T |
|
| Q |
230 |
gtcaaggggggttacgactttgtcgataagttcgtcagggaggattatcagacgattgatattcatgagaacagt |
304 |
Q |
| |
|
||| ||| |||| ||||| | |||||||||||||| |||| |||| |||| || |||||||||||||||||| |
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|
| T |
1986847 |
gtcgaggaacgttaggacttcgacgataagttcgtcatggagaattaccagaggagggatattcatgagaacagt |
1986921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 13417722 - 13417828
Alignment:
| Q |
130 |
gtgtagattgcttcttatggtgccttttgacgaagtctggatcggagattagggttttccatgacttgcaaacacacttcatcagcatcagagtttttac |
229 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||| |||||| |||| |||||||||||| |||||||| |||||||||||| ||||||| |||||| |
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| T |
13417722 |
gtgtagattgcctcttaaggtgcattttgacgaagagtggatcagagaatagggttttccacgacttgcatacacacttcatccttatcagagattttac |
13417821 |
T |
|
| Q |
230 |
gtcaagg |
236 |
Q |
| |
|
|||||| |
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|
| T |
13417822 |
atcaagg |
13417828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 19721293 - 19721222
Alignment:
| Q |
155 |
tttgacgaagtctggatcggagattagggttttccatgacttgcaaacacacttcatcagcatcagagtttt |
226 |
Q |
| |
|
|||| ||||| | ||||| ||||||||||||||| |||| ||||| ||||| ||||| ||||||||||||| |
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| T |
19721293 |
tttggcgaaggcgggatcagagattagggttttcaatgatttgcagacacatttcatttgcatcagagtttt |
19721222 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 161329 - 161085
Alignment:
| Q |
1 |
ccttgtaatagaattggttggaagggacggcaagggtgatagaattcgaagtaccctccatcaaactagagatgggcacgaccttacattctcgcaaatc |
100 |
Q |
| |
|
||||||||| |||||||| | |||| | | ||||||||||||| |||||| || ||||||||||| ||||||||| | || |||| || | || | |
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|
| T |
161329 |
ccttgtaattgaattggtggtaaggatcagtaagggtgatagaactcgaagaacactccatcaaacgagagatgggtgcagccatacaatcaccagaacc |
161230 |
T |
|
| Q |
101 |
tttataattgtttgtgagaaaagcgaggtgtgt---------agattgcttcttatggtgccttttgacgaagtctggatcggagattagggttttccat |
191 |
Q |
| |
|
|| | | ||||||| |||||||||||||||||| |||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||| |
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|
| T |
161229 |
ttcaaacttgtttgagagaaaagcgaggtgtgtcattcctgtagattgtttcttaaagtgcattttgacgaagactggatcggagattagggttttccaa |
161130 |
T |
|
| Q |
192 |
gacttgcaaacacacttcatcagcatcagagtttttacgtcaagg |
236 |
Q |
| |
|
||||||||||||||||||||| |||| |||| ||||||||||||| |
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|
| T |
161129 |
gacttgcaaacacacttcatctgcataagagattttacgtcaagg |
161085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 161052 - 160978
Alignment:
| Q |
296 |
gagaacagtcctgttgttgag-ttggaagtgaaaaccctttggaattttttgtggaagaaaccctagaaggatatt |
370 |
Q |
| |
|
||||||||| | | ||||||| ||| |||||||||||||| | ||| |||||||||||||||||||||||| |||| |
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|
| T |
161052 |
gagaacagtgcgggtgttgaggttgaaagtgaaaacccttcg-aatcttttgtggaagaaaccctagaagggtatt |
160978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 5437654 - 5437717
Alignment:
| Q |
148 |
ggtgccttttgacgaagtctggatcggagattagggttttccatgacttgcaaacacacttcat |
211 |
Q |
| |
|
||||| |||||||||| ||| |||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
5437654 |
ggtgcattttgacgaaaaatggttcggagatgagggtgttccatgacttgcaaacacacttcat |
5437717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 18921514 - 18921595
Alignment:
| Q |
148 |
ggtgccttttgacgaagtctggatcggagattagggttttccatgacttgcaaacacacttcatcagcatcagagtttttac |
229 |
Q |
| |
|
||||| ||||||||||| |||| || |||||||||||| |||| |||||||| || ||||| |||||||||||||||| |
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|
| T |
18921514 |
ggtgcattttgacgaaggaaggatgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagtttttac |
18921595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 553811 - 553767
Alignment:
| Q |
167 |
tggatcggagattagggttttccatgacttgcaaacacacttcat |
211 |
Q |
| |
|
|||||| ||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
553811 |
tggatcagagatgagggtgttccatgatttgcaaacacacttcat |
553767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 20578959 - 20578995
Alignment:
| Q |
168 |
ggatcggagattagggttttccatgacttgcaaacac |
204 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
20578959 |
ggatcagagattagggttttccatgatttgcaaacac |
20578995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 42414210 - 42414172
Alignment:
| Q |
168 |
ggatcggagattagggttttccatgacttgcaaacacac |
206 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
42414210 |
ggatcggagattagggttttccatgatttgcatacacac |
42414172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 43907724 - 43907690
Alignment:
| Q |
174 |
gagattagggttttccatgacttgcaaacacactt |
208 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
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|
| T |
43907724 |
gagattagggttttccatgatttgcaaacacactt |
43907690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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