View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0695_low_1 (Length: 764)
Name: NF0695_low_1
Description: NF0695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0695_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 547; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 106 - 735
Target Start/End: Complemental strand, 14053105 - 14052475
Alignment:
| Q |
106 |
aagaatatggcacttactaatatagaagaatccacaaattatcaagatcttcccacaaattccttcttaagggatatgaaaagggttaattaaatgcttt |
205 |
Q |
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||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14053105 |
aagaaaatggcacttactaatgtagaagaatccacaatttatcaagatcttcccacaaattccttcttaagggatatgaaaatggttaattaaatgcttt |
14053006 |
T |
|
| Q |
206 |
tagaggatagcctgcttttggcctccaacattaacacttagtgtatgtttgatataacatcggtattgttggtcgaatccaaatgtatgcattggcaaca |
305 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
14053005 |
tagaggatagtctgcttttggcctccaacattaacacttagtgtatgtttgatataacatcgatattgttggtcgaatccaaatgtatacattggcaaca |
14052906 |
T |
|
| Q |
306 |
taagatgtatacatcggacaattttaaaagattgctttatcaattgtgctgctaagttctctttttccgtcactgattgttcttctccccttgtttgctc |
405 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14052905 |
taagatgtatacatcggacaattttaaaagatccctttatcaattgtgcggctaagttctctttttccgtcaccgattgttcttctccccttgtttgctc |
14052806 |
T |
|
| Q |
406 |
aaaattgataaaatacc-ctatcgaaggtagtgtattttcagataaaatactctattgaaagcttactttcggtaaaaatcgagtattaaagcggagttg |
504 |
Q |
| |
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||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14052805 |
aaaattgataaaatacctctattgaaggtagtgtattttcagataaaatactctactgaaagcttacttccggtaaaaatcgagtattaaagcggagttg |
14052706 |
T |
|
| Q |
505 |
gatgagcaatgtcactcaattccttactctataatttgtccaactgaaaacgaggatgtgattgggaaaaggaaggcttgactgcttggttttcgaaagt |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14052705 |
gatgagcaatgtcactcaattccttactctataatttgtccaactgaaaacggggatgtgattgggaaaaggaaggcttgactgcttggttttcgaaagt |
14052606 |
T |
|
| Q |
605 |
acttgttcgactcaaacgtgagcaccagcaactttaaatcatttgtgttttgtaatccatgttctaactccatataatacatttattcttgaagattcaa |
704 |
Q |
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||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14052605 |
acttgttcgactcgaacatgatcaccagcaactttaaatcatttgtgttttgtaatccatgttctaactccatataatacatttattcttgaaaattcaa |
14052506 |
T |
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| Q |
705 |
ctatacacattgatacacaccacttcctatc |
735 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
14052505 |
ctatacacattgatacacaccacttcctatc |
14052475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 106 - 735
Target Start/End: Complemental strand, 14363133 - 14362503
Alignment:
| Q |
106 |
aagaatatggcacttactaatatagaagaatccacaaattatcaagatcttcccacaaattccttcttaagggatatgaaaagggttaattaaatgcttt |
205 |
Q |
| |
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||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14363133 |
aagaaaatggcacttactaatgtagaagaatccacaatttatcaagatcttcccacaaattccttcttaagggatatgaaaatggttaattaaatgcttt |
14363034 |
T |
|
| Q |
206 |
tagaggatagcctgcttttggcctccaacattaacacttagtgtatgtttgatataacatcggtattgttggtcgaatccaaatgtatgcattggcaaca |
305 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
14363033 |
tagaggatagtctgcttttggcctccaacattaacacttagtgtatgtttgatataacatcgatattgttggtcgaatccaaatgtatacattggcaaca |
14362934 |
T |
|
| Q |
306 |
taagatgtatacatcggacaattttaaaagattgctttatcaattgtgctgctaagttctctttttccgtcactgattgttcttctccccttgtttgctc |
405 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14362933 |
taagatgtatacatcggacaattttaaaagatccctttatcaattgtgcggctaagttctctttttccgtcaccgattgttcttctccccttgtttgctc |
14362834 |
T |
|
| Q |
406 |
aaaattgataaaatacc-ctatcgaaggtagtgtattttcagataaaatactctattgaaagcttactttcggtaaaaatcgagtattaaagcggagttg |
504 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14362833 |
aaaattgataaaatacctctattgaaggtagtgtattttcagataaaatactctactgaaagcttacttccggtaaaaatcgagtattaaagcggagttg |
14362734 |
T |
|
| Q |
505 |
gatgagcaatgtcactcaattccttactctataatttgtccaactgaaaacgaggatgtgattgggaaaaggaaggcttgactgcttggttttcgaaagt |
604 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14362733 |
gatgagcaatgtcactcaattccttactctataatttgtccaactgaaaacggggatgtgattgggaaaaggaaggcttgactgcttggttttcgaaagt |
14362634 |
T |
|
| Q |
605 |
acttgttcgactcaaacgtgagcaccagcaactttaaatcatttgtgttttgtaatccatgttctaactccatataatacatttattcttgaagattcaa |
704 |
Q |
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||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14362633 |
acttgttcgactcgaacatgatcaccagcaactttaaatcatttgtgttttgtaatccatgttctaactccatataatacatttattcttgaaaattcaa |
14362534 |
T |
|
| Q |
705 |
ctatacacattgatacacaccacttcctatc |
735 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
14362533 |
ctatacacattgatacacaccacttcctatc |
14362503 |
T |
|
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