View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0695_low_11 (Length: 317)
Name: NF0695_low_11
Description: NF0695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0695_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 3844992 - 3845296
Alignment:
| Q |
1 |
ccctcttcaagggtcccctcccctctcccccaccttgcccaatctgcaactggtttaagtcatgcgcgacccattaactgacctcatgcattaattcccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3844992 |
ccctcttcaagggtcccctcccctctcccccaccttgcccaatctgcaactggtttaagtcatgcgcgacccattaactgacctcatgcattaattcccc |
3845091 |
T |
|
| Q |
101 |
catcaacattattagcacattgcatcgcgtaggatcgaaaccataacctcctacataatattcctttagtgtctcgacttaaaccaataatactagtagc |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3845092 |
catcaacattaatagcacattgcatcgcgtaggatcgaaaccataacctcctacataatattcctttagtgtctcgacttaaaccaataatactagtagc |
3845191 |
T |
|
| Q |
201 |
aggatcgaaacctgacgtcctacataatagttcttcaatgtctcgactcaaaccactaggtttcttgtttgaggtgtgtgtatgtattatcaaaatatca |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| |
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| T |
3845192 |
aggatcgaaacctgacgtcctacataatagtccttcaatgtctcgactcaaaccactaggttactctttcgaggtgtgtgtatgtattatcaaaatatca |
3845291 |
T |
|
| Q |
301 |
atatt |
305 |
Q |
| |
|
||||| |
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|
| T |
3845292 |
atatt |
3845296 |
T |
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