View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0695_low_12 (Length: 291)

Name: NF0695_low_12
Description: NF0695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0695_low_12
NF0695_low_12
[»] chr2 (2 HSPs)
chr2 (59-271)||(3890388-3890602)
chr2 (28-57)||(3890326-3890355)
[»] chr5 (2 HSPs)
chr5 (59-90)||(29075865-29075896)
chr5 (59-105)||(16773891-16773937)
[»] chr8 (2 HSPs)
chr8 (62-100)||(1100584-1100622)
chr8 (59-100)||(8485083-8485124)
[»] scaffold0258 (1 HSPs)
scaffold0258 (59-100)||(15274-15315)
[»] chr4 (1 HSPs)
chr4 (62-99)||(37720166-37720203)
[»] chr7 (1 HSPs)
chr7 (59-99)||(41487443-41487483)
[»] chr3 (1 HSPs)
chr3 (63-103)||(47824204-47824243)
[»] chr1 (1 HSPs)
chr1 (60-104)||(36124918-36124961)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 59 - 271
Target Start/End: Original strand, 3890388 - 3890602
Alignment:
Q  59 tgccaatttagatgggctaatttagcttcttctaacaaaaaattatgtgtactatactttgcattataggtgttgtatcctctt-atcatttacttgaat 157  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||    
T  3890388 tgccaatttagatgggctaatt-agcttcttctaacaaaaaattatgtgtactataatttgcattataggtgttgtatactctttatcatttacttaaat 3890486  T
Q  158 ggttcattttgtttttattactgcttgaattattcattttcaagtaatggtgca--tttttctttaaaagttgtgtattgtagttattgctttatagaat 255  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||   ||  ||||| ||| |||||||||||||||||||||||| |||||||||    
T  3890487 ggttccttttgtttttattactgcttgaattattcattttcaagtaatgccacattttttttttttaaagttgtgtattgtagttattgcattatagaat 3890586  T
Q  256 gggtaggggtttcctg 271  Q
    ||||||||||||||||    
T  3890587 gggtaggggtttcctg 3890602  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 57
Target Start/End: Original strand, 3890326 - 3890355
Alignment:
Q  28 tgatgatggcttgggaccttggagagtgct 57  Q
    ||||||||||||||||||||||||||||||    
T  3890326 tgatgatggcttgggaccttggagagtgct 3890355  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 90
Target Start/End: Original strand, 29075865 - 29075896
Alignment:
Q  59 tgccaatttagatgggctaatttagcttcttc 90  Q
    ||||||||||||||||||||||||||||||||    
T  29075865 tgccaatttagatgggctaatttagcttcttc 29075896  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 16773891 - 16773937
Alignment:
Q  59 tgccaatttagatgggctaatttagcttcttctaacaaaaaattatg 105  Q
    ||||||||||| |||||||||||||||||||| || |||||| ||||    
T  16773891 tgccaatttaggtgggctaatttagcttcttcaaaaaaaaaaatatg 16773937  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 1100584 - 1100622
Alignment:
Q  62 caatttagatgggctaatttagcttcttctaacaaaaaa 100  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  1100584 caatttagatgggctaatttagcttcttcaaaaaaaaaa 1100622  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 8485083 - 8485124
Alignment:
Q  59 tgccaatttagatgggctaatttagcttcttctaacaaaaaa 100  Q
    ||||||||||| |||||||||||||||||||| || ||||||    
T  8485083 tgccaatttaggtgggctaatttagcttcttcaaaaaaaaaa 8485124  T

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Target: scaffold0258 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 15315 - 15274
Alignment:
Q  59 tgccaatttagatgggctaatttagcttcttctaacaaaaaa 100  Q
    ||||||||||| |||||||||||||||||||| || ||||||    
T  15315 tgccaatttaggtgggctaatttagcttcttcaaagaaaaaa 15274  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 37720203 - 37720166
Alignment:
Q  62 caatttagatgggctaatttagcttcttctaacaaaaa 99  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  37720203 caatttaggtgggctaatttagcttcttcaaacaaaaa 37720166  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 41487443 - 41487483
Alignment:
Q  59 tgccaatttagatgggctaatttagcttcttctaacaaaaa 99  Q
    ||||||||||| |||||||||||||||||||| || |||||    
T  41487443 tgccaatttaggtgggctaatttagcttcttcaaaaaaaaa 41487483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 47824204 - 47824243
Alignment:
Q  63 aatttagatgggctaatttagcttcttctaacaaaaaatta 103  Q
    ||||||||||||||||||||||||||| ||| |||||||||    
T  47824204 aatttagatgggctaatttagcttctt-taaaaaaaaatta 47824243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 36124918 - 36124961
Alignment:
Q  60 gccaatttagatgggctaatttagcttcttctaacaaaaaattat 104  Q
    |||||||||| |||||||||||||||||||| || ||||||||||    
T  36124918 gccaatttaggtgggctaatttagcttcttc-aaaaaaaaattat 36124961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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