View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0695_low_15 (Length: 220)

Name: NF0695_low_15
Description: NF0695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0695_low_15
NF0695_low_15
[»] chr4 (2 HSPs)
chr4 (1-117)||(4119608-4119724)
chr4 (161-194)||(4119739-4119772)


Alignment Details
Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 4119608 - 4119724
Alignment:
Q  1 gcttgagcttcatagttaatacatgttcataatagccataaacaagataaaaccatcacggtagcttgctcaaagtcacaaaataataacctaccaagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4119608 gcttgagcttcatagttaatacatgttcataatagccataaacaagataaaaccatcacggtagcttgctcaaagtcacaaaataataacctaccaagga 4119707  T
Q  101 taaaatcatcacttcat 117  Q
    |||||||||||||||||    
T  4119708 taaaatcatcacttcat 4119724  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 4119739 - 4119772
Alignment:
Q  161 aaaaatatcttccattttgtatcaccagaataat 194  Q
    ||||||||||||||||||||||||||||||||||    
T  4119739 aaaaatatcttccattttgtatcaccagaataat 4119772  T

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