View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0695_low_2 (Length: 489)
Name: NF0695_low_2
Description: NF0695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0695_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 101 - 460
Target Start/End: Original strand, 48664799 - 48665158
Alignment:
| Q |
101 |
atgaacctagtcaaggtggggttactgtgatgaggcaatgtttcattgagaagattgttaaacctggaaattcgtgttcgattagcatgactaagggaat |
200 |
Q |
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| T |
48664799 |
atgaacctagtcaaggtggggttactgtgatgaggcaatgtttcattgagaagattgttaaacctggaaatttgtgttcgattagcatgactaagggaat |
48664898 |
T |
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| Q |
201 |
aaaagaaaaattatggaaggaagaaaagataattagtgggggattttgaatgtttattattgtttttaatgtggagagtcccaggtgaatggtaatgtgt |
300 |
Q |
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| T |
48664899 |
aaaagaaaaattatggaaggaagaaaagataattagtgggggattttgaatgtttattattgtttttaatgtggagagtcccaggtgaatggtaatgtgt |
48664998 |
T |
|
| Q |
301 |
gagtgttttttaacagaggacaagcgggggtttatgtcaattggaaaattaagggaggtgagtgttgagtttaaaactggagggagttgtatgcgatatt |
400 |
Q |
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| T |
48664999 |
gagtgttttttaacagaggacaagcgggggtttatgtcaattggaaaattaagggaggtgagtgttgagtttaaaactggagggagttgtatgcgatatt |
48665098 |
T |
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| Q |
401 |
taatgaaacctcaaagggatgtgaatgtaatttccctatattttaagtatatgcaaatca |
460 |
Q |
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| T |
48665099 |
taatgaaacctcaaagggatgtgaatgtaatttccctatattttaagtatatgcaaatca |
48665158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 53644326 - 53644387
Alignment:
| Q |
351 |
aagggaggtgagtgttgagtttaaaactggagggagttgtatgcgatatttaatgaaacctcaa |
414 |
Q |
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| T |
53644326 |
aagggaggtaagtgttgagtttaaaactagagg--ggtgtatgtgatattcaatgaaacctcaa |
53644387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 43903333 - 43903395
Alignment:
| Q |
351 |
aagggaggtgagtgttgagtttaaaactggagggagttgtatgcgatatttaatgaaacctcaa |
414 |
Q |
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| T |
43903333 |
aagggaggtgagtgtagagtttaaaactaga-ggaggtgtttgtgatattcaatgaaacctcaa |
43903395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 433
Target Start/End: Complemental strand, 40493161 - 40493094
Alignment:
| Q |
364 |
gttgagtttaaaactggagggagttgtatgcgatatttaatgaaacctcaaagggatgtgaatgtaattt |
433 |
Q |
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| T |
40493161 |
gttgagtttaaaactagagggggt-gtatgtgatattcaatgaaacctc-aagggaggtgaatgcaattt |
40493094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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