View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0695_low_4 (Length: 428)
Name: NF0695_low_4
Description: NF0695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0695_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 12 - 421
Target Start/End: Complemental strand, 49446539 - 49446130
Alignment:
| Q |
12 |
agctgttgccactagtgtccttgcaaagaggtggatacatctatggtgctcagttctcgctatcaacttcagcaacacagagctatatcaccaagaagcc |
111 |
Q |
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| T |
49446539 |
agctgttgccactagtgtccttgcaaagaggtggatacatctatggtgctcagttctcgctatcaacttcagcaacacagagctatatcaccaagaagcc |
49446440 |
T |
|
| Q |
112 |
tgttttcgcttcagctagtctgtgtattctgttttgctttcacgtaattccatcaaaagtttttgccttggcattacatatggtgaggagggcatcattg |
211 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49446439 |
tgttttcgcttcagcgagtctgtgtattctgttttgctttcacgtaattccatcaaaagtttttgccttggcattacatatggtgaggagggcatcattg |
49446340 |
T |
|
| Q |
212 |
gctttccccatgtcgtcaaatgggtcaaccatgttgtacaaagcggagttgagaccattgatctccttgtggatactatgtttggtggtggtcctaaatt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49446339 |
gctttccccatgtcgtcaaatgggtcaaccatgttgtacaaagcggagttgagaccattgatctccttgtggatactatgtttggtggtggtcctaaatt |
49446240 |
T |
|
| Q |
312 |
gcctattagcattctcagctgcaagactcttgttgttctcaaatttcagcgtttctctgtgaagggctttacttccattagacttccctgcctcaaaatc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49446239 |
gcctattagcattctcagctgcaagactcttgttgttctcaaatttcagcgtttctctgtgaagggctttacttccattagacttccctgcctcaaaatc |
49446140 |
T |
|
| Q |
412 |
cttcatctca |
421 |
Q |
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|||||||||| |
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| T |
49446139 |
cttcatctca |
49446130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 415
Target Start/End: Complemental strand, 17642192 - 17642084
Alignment:
| Q |
307 |
aaattgcctattagcattctcagctgcaagactcttgttgttctcaaatttcagcgtttctctgtgaagggctttacttccattagacttccctgcctca |
406 |
Q |
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||||||| | |||||||||| | ||||| |||||||||||||||| | ||| | | ||| |||||||||| ||| ||| | ||||||| | || ||||| |
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| T |
17642192 |
aaattgcttgttagcattctaacctgcaggactcttgttgttctcgagttttatgggttcgctgtgaaggggttttctttctttagactcctctccctca |
17642093 |
T |
|
| Q |
407 |
aaatccttc |
415 |
Q |
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||||||||| |
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| T |
17642092 |
aaatccttc |
17642084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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