View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0695_low_5 (Length: 384)

Name: NF0695_low_5
Description: NF0695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0695_low_5
NF0695_low_5
[»] chr8 (2 HSPs)
chr8 (53-191)||(8790983-8791121)
chr8 (263-369)||(8791193-8791299)
[»] chr1 (10 HSPs)
chr1 (69-158)||(49250361-49250449)
chr1 (69-156)||(14945445-14945530)
chr1 (69-156)||(14940203-14940288)
chr1 (69-156)||(14950210-14950295)
chr1 (69-156)||(14954451-14954536)
chr1 (69-132)||(14941579-14941640)
chr1 (69-132)||(14951586-14951647)
chr1 (69-132)||(14955827-14955888)
chr1 (91-158)||(270075-270142)
chr1 (69-115)||(49250068-49250114)
[»] chr7 (1 HSPs)
chr7 (88-138)||(6205769-6205819)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 53 - 191
Target Start/End: Original strand, 8790983 - 8791121
Alignment:
Q  53 atgtagagaatcaatcttgtactttagttgtatcggtggttgtaaagtttaccacatataaaatattcaaattgaagagtatcaatcaaatgaaattact 152  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8790983 atgtagagaatcaatcttgtactttagttttatcggtggttgtaaagtttaccacatataaaatattcaaattgaggagtatcaatcaaatgaaattact 8791082  T
Q  153 ttgttactgcaaaacctacaagatagataatatgtggag 191  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  8791083 ttgttactgcaaaacctacaagatagatattatgtggag 8791121  T

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Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 263 - 369
Target Start/End: Original strand, 8791193 - 8791299
Alignment:
Q  263 taagtgtatagcaaatttacaattaaagaaaagataaagagggtagaggaatatacacattaatatttttaacccaatttggcataaaattgtaggggta 362  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8791193 taagtgtatagaaaatctacaattaaagaaaagataaagagggtagaggaatatacacattaatattattaacccaatttggcataaaattgtaggggta 8791292  T
Q  363 gtattat 369  Q
    || ||||    
T  8791293 gtgttat 8791299  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 49250449 - 49250361
Alignment:
Q  69 ttgtactttagttgtatcggtggttgtaaagtttaccacatataaaatattcaaattgaagagtatcaatcaaatgaaattactttgtta 158  Q
    ||||||||| |||||||  |||||||||||||| ||||||| ||||| ||||||||||||||||||  || ||||||| |||||||||||    
T  49250449 ttgtactttcgttgtataagtggttgtaaagttgaccacatgtaaaaaattcaaattgaagagtat-gatgaaatgaagttactttgtta 49250361  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 14945530 - 14945445
Alignment:
Q  69 ttgtactttagttgtatcggtggttgtaaagtttaccacatataaaatattcaaattgaagagtatcaatcaaatgaaattactttgt 156  Q
    ||||||||||||||||| ||||||||||| ||| |||   | ||||||||||||||||||||||||| || ||||||| |||||||||    
T  14945530 ttgtactttagttgtataggtggttgtaaggttaaccg--tgtaaaatattcaaattgaagagtatcgatgaaatgaagttactttgt 14945445  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 14940288 - 14940203
Alignment:
Q  69 ttgtactttagttgtatcggtggttgtaaagtttaccacatataaaatattcaaattgaagagtatcaatcaaatgaaattactttgt 156  Q
    |||||| |||||||||| ||||||||||| ||| ||||  | ||||||||| ||||||||||||||| || ||||||| |||||||||    
T  14940288 ttgtacgttagttgtataggtggttgtaaggttaacca--tgtaaaatattgaaattgaagagtatcgatgaaatgaagttactttgt 14940203  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 14950295 - 14950210
Alignment:
Q  69 ttgtactttagttgtatcggtggttgtaaagtttaccacatataaaatattcaaattgaagagtatcaatcaaatgaaattactttgt 156  Q
    |||||| |||||||||| ||||||||||| ||| ||||  | ||||||||| ||||||||||||||| || ||||||| |||||||||    
T  14950295 ttgtacgttagttgtataggtggttgtaaggttaacca--tgtaaaatattgaaattgaagagtatcgatgaaatgaagttactttgt 14950210  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 14954536 - 14954451
Alignment:
Q  69 ttgtactttagttgtatcggtggttgtaaagtttaccacatataaaatattcaaattgaagagtatcaatcaaatgaaattactttgt 156  Q
    |||||| |||||||||| ||||||||||| ||| ||||  | ||||||||| ||||||||||||||| || ||||||| |||||||||    
T  14954536 ttgtacgttagttgtataggtggttgtaaggttaacca--tgtaaaatattgaaattgaagagtatcgatgaaatgaagttactttgt 14954451  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 14941640 - 14941579
Alignment:
Q  69 ttgtactttagttgtatcggtggttgtaaagtttaccacatataaaatattcaaattgaagagt 132  Q
    ||||||||||||||||| ||||||||||||||  ||  ||| ||||||||||||||||||||||    
T  14941640 ttgtactttagttgtataggtggttgtaaagtcaac--catgtaaaatattcaaattgaagagt 14941579  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 14951647 - 14951586
Alignment:
Q  69 ttgtactttagttgtatcggtggttgtaaagtttaccacatataaaatattcaaattgaagagt 132  Q
    ||||||||||||||||| ||||||||||||||  ||  ||| ||||||||||||||||||||||    
T  14951647 ttgtactttagttgtataggtggttgtaaagtcaac--catgtaaaatattcaaattgaagagt 14951586  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 14955888 - 14955827
Alignment:
Q  69 ttgtactttagttgtatcggtggttgtaaagtttaccacatataaaatattcaaattgaagagt 132  Q
    ||||||||||||||||| ||||||||||||||  ||  ||| ||||||||||||||||||||||    
T  14955888 ttgtactttagttgtataggtggttgtaaagtcaac--catgtaaaatattcaaattgaagagt 14955827  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 158
Target Start/End: Original strand, 270075 - 270142
Alignment:
Q  91 gttgtaaagtttaccacatataaaatattcaaattgaagagtatcaatcaaatgaaattactttgtta 158  Q
    ||||||||||| | ||||| ||||||||||||||||| |||||| | | ||||||| |||| ||||||    
T  270075 gttgtaaagttgaacacatgtaaaatattcaaattgaggagtattagtgaaatgaagttaccttgtta 270142  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 49250068 - 49250114
Alignment:
Q  69 ttgtactttagttgtatcggtggttgtaaagtttaccacatataaaa 115  Q
    |||||||||||||||||  |||||||||||||| ||||||| |||||    
T  49250068 ttgtactttagttgtattagtggttgtaaagttgaccacatgtaaaa 49250114  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 6205769 - 6205819
Alignment:
Q  88 gtggttgtaaagtttaccacatataaaatattcaaattgaagagtatcaat 138  Q
    |||||||||||||| ||||||| ||||| ||||||||||||||||| ||||    
T  6205769 gtggttgtaaagttgaccacatgtaaaacattcaaattgaagagtaccaat 6205819  T

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