View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0695_low_6 (Length: 382)

Name: NF0695_low_6
Description: NF0695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0695_low_6
NF0695_low_6
[»] chr6 (3 HSPs)
chr6 (1-378)||(6935865-6936242)
chr6 (130-364)||(6922141-6922374)
chr6 (130-304)||(6948671-6948844)
[»] chr7 (3 HSPs)
chr7 (130-304)||(1986748-1986921)
chr7 (130-236)||(13417722-13417828)
chr7 (155-226)||(19721222-19721293)
[»] scaffold0024 (2 HSPs)
scaffold0024 (1-236)||(161085-161329)
scaffold0024 (296-370)||(160978-161052)
[»] chr2 (4 HSPs)
chr2 (148-211)||(5437654-5437717)
chr2 (148-229)||(18921514-18921595)
chr2 (167-211)||(553767-553811)
chr2 (168-204)||(20578959-20578995)
[»] chr1 (2 HSPs)
chr1 (168-206)||(42414172-42414210)
chr1 (174-208)||(43907690-43907724)


Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 6935865 - 6936242
Alignment:
Q  1 ccttgtaatagaattggttggaagggacggcaagggtgatagaattcgaagtaccctccatcaaactagagatgggcacgaccttacattctcgcaaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6935865 ccttgtaatagaattggttggaagggacggcaagggtgatagaattcgaagtaccctccatcaaactagagatgggcacgaccttacattctcgcaaatc 6935964  T
Q  101 tttataattgtttgtgagaaaagcgaggtgtgtagattgcttcttatggtgccttttgacgaagtctggatcggagattagggttttccatgacttgcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6935965 tttataattgtttgtgagaaaagcgaggtgtgtagattgcttcttatggtgccttttgacgaagtctggatcggagattagggttttccatgacttgcaa 6936064  T
Q  201 acacacttcatcagcatcagagtttttacgtcaaggggggttacgactttgtcgataagttcgtcagggaggattatcagacgattgatattcatgagaa 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6936065 acacacttcatcagcatcagagtttttacgtcaaggggcgttacgactttgtcgataagttcgtcagggaggattatcagacgattgatattcatgagaa 6936164  T
Q  301 cagtcctgttgttgagttggaagtgaaaaccctttggaattttttgtggaagaaaccctagaaggatattgttggaga 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6936165 cagtcctgttgttgagttggaagtgaaaaccctttggaattttttgtggaagaaaccctagaaggatattggtggaga 6936242  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 130 - 364
Target Start/End: Original strand, 6922141 - 6922374
Alignment:
Q  130 gtgtagattgcttcttatggtgccttttgacgaagtctggatcggagattagggttttccatgacttgcaaacacacttcatcagcatcagagtttttac 229  Q
    ||||||||||||||||| ||||| ||||| | ||||| |||||  |||||||||||||||| |||||| ||||||||||||||  ||| |||| |||||     
T  6922141 gtgtagattgcttcttaaggtgcattttggcaaagtcgggatccaagattagggttttccaagacttggaaacacacttcatcgacattagagattttat 6922240  T
Q  230 gtcaaggggggttacgactttgtcgataagttcgtcagggaggattatcagacgattgatattcatgagaacagtcctgttgttg-agttggaagtgaaa 328  Q
    ||| |||    ||| ||||| | ||||||| |||||| ||||||||| |||| ||  ||||||||||||||||||   ||||||| ||||| | ||||||    
T  6922241 gtcgaggaacattaggacttcgacgataaggtcgtcatggaggattaccagaggagggatattcatgagaacagt-aggttgttgaagttgtacgtgaaa 6922339  T
Q  329 accctttggaattttttgtggaagaaaccctagaag 364  Q
    |||| || ||| ||||||||||||||||||||||||    
T  6922340 accc-ttcgaactttttgtggaagaaaccctagaag 6922374  T

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Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 130 - 304
Target Start/End: Original strand, 6948671 - 6948844
Alignment:
Q  130 gtgtagattgcttcttatggtgccttttgacgaagtctggatcggagattagggttttccatgacttgcaaacacacttcatcagcatcagagtttttac 229  Q
    ||||||||||||||||| ||||| ||||| ||||||  |||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| ||||||    
T  6948671 gtgtagattgcttcttaaggtgcattttggcgaagtagggatcggatattagggttttccatgacttgcaaacacacttcatcaacattagagattttac 6948770  T
Q  230 gtcaaggggggttacgactttgtcgataagttcgtcagggaggattatcagacgattgatattcatgagaacagt 304  Q
    ||  |||   |||| |||||   ||||||| |||||| |||| |||| |||| ||  ||||||||||||||||||    
T  6948771 gt-gaggaacgttaggacttcaacgataaggtcgtcatggagaattaccagaggagggatattcatgagaacagt 6948844  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 130 - 304
Target Start/End: Original strand, 1986748 - 1986921
Alignment:
Q  130 gtgtagattgcttcttatggtgccttttgacgaagtctggatcggagattagggttttccatgacttgcaaacacacttcatcagcatcagagtttttac 229  Q
    ||||||||||||| ||| ||||| ||||| ||||||  |||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||| ||||||    
T  1986748 gtgtagattgctt-ttaaggtgcattttggcgaagtagggatgggatattagggttttccatgacttgcaaacacacttcatcaacattagagattttac 1986846  T
Q  230 gtcaaggggggttacgactttgtcgataagttcgtcagggaggattatcagacgattgatattcatgagaacagt 304  Q
    ||| |||   |||| ||||| | |||||||||||||| |||| |||| |||| ||  ||||||||||||||||||    
T  1986847 gtcgaggaacgttaggacttcgacgataagttcgtcatggagaattaccagaggagggatattcatgagaacagt 1986921  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 13417722 - 13417828
Alignment:
Q  130 gtgtagattgcttcttatggtgccttttgacgaagtctggatcggagattagggttttccatgacttgcaaacacacttcatcagcatcagagtttttac 229  Q
    ||||||||||| ||||| ||||| |||||||||||  |||||| |||| |||||||||||| |||||||| ||||||||||||   ||||||| ||||||    
T  13417722 gtgtagattgcctcttaaggtgcattttgacgaagagtggatcagagaatagggttttccacgacttgcatacacacttcatccttatcagagattttac 13417821  T
Q  230 gtcaagg 236  Q
     ||||||    
T  13417822 atcaagg 13417828  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 19721293 - 19721222
Alignment:
Q  155 tttgacgaagtctggatcggagattagggttttccatgacttgcaaacacacttcatcagcatcagagtttt 226  Q
    |||| ||||| | ||||| ||||||||||||||| |||| ||||| ||||| |||||  |||||||||||||    
T  19721293 tttggcgaaggcgggatcagagattagggttttcaatgatttgcagacacatttcatttgcatcagagtttt 19721222  T

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Target: scaffold0024 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 161329 - 161085
Alignment:
Q  1 ccttgtaatagaattggttggaagggacggcaagggtgatagaattcgaagtaccctccatcaaactagagatgggcacgaccttacattctcgcaaatc 100  Q
    ||||||||| |||||||| | ||||  | | ||||||||||||| |||||| || ||||||||||| |||||||||  |  || |||| || |   || |    
T  161329 ccttgtaattgaattggtggtaaggatcagtaagggtgatagaactcgaagaacactccatcaaacgagagatgggtgcagccatacaatcaccagaacc 161230  T
Q  101 tttataattgtttgtgagaaaagcgaggtgtgt---------agattgcttcttatggtgccttttgacgaagtctggatcggagattagggttttccat 191  Q
    || | | ||||||| ||||||||||||||||||         |||||| ||||||  |||| ||||||||||| |||||||||||||||||||||||||     
T  161229 ttcaaacttgtttgagagaaaagcgaggtgtgtcattcctgtagattgtttcttaaagtgcattttgacgaagactggatcggagattagggttttccaa 161130  T
Q  192 gacttgcaaacacacttcatcagcatcagagtttttacgtcaagg 236  Q
    ||||||||||||||||||||| |||| |||| |||||||||||||    
T  161129 gacttgcaaacacacttcatctgcataagagattttacgtcaagg 161085  T

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Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 161052 - 160978
Alignment:
Q  296 gagaacagtcctgttgttgag-ttggaagtgaaaaccctttggaattttttgtggaagaaaccctagaaggatatt 370  Q
    ||||||||| | | ||||||| ||| |||||||||||||| | ||| |||||||||||||||||||||||| ||||    
T  161052 gagaacagtgcgggtgttgaggttgaaagtgaaaacccttcg-aatcttttgtggaagaaaccctagaagggtatt 160978  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 5437654 - 5437717
Alignment:
Q  148 ggtgccttttgacgaagtctggatcggagattagggttttccatgacttgcaaacacacttcat 211  Q
    ||||| ||||||||||   ||| |||||||| ||||| ||||||||||||||||||||||||||    
T  5437654 ggtgcattttgacgaaaaatggttcggagatgagggtgttccatgacttgcaaacacacttcat 5437717  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 18921514 - 18921595
Alignment:
Q  148 ggtgccttttgacgaagtctggatcggagattagggttttccatgacttgcaaacacacttcatcagcatcagagtttttac 229  Q
    ||||| |||||||||||   ||||  || |||||||||||| |||| |||||||| || |||||  ||||||||||||||||    
T  18921514 ggtgcattttgacgaaggaaggatgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagtttttac 18921595  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 553811 - 553767
Alignment:
Q  167 tggatcggagattagggttttccatgacttgcaaacacacttcat 211  Q
    |||||| ||||| ||||| |||||||| |||||||||||||||||    
T  553811 tggatcagagatgagggtgttccatgatttgcaaacacacttcat 553767  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 20578959 - 20578995
Alignment:
Q  168 ggatcggagattagggttttccatgacttgcaaacac 204  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  20578959 ggatcagagattagggttttccatgatttgcaaacac 20578995  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 42414210 - 42414172
Alignment:
Q  168 ggatcggagattagggttttccatgacttgcaaacacac 206  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  42414210 ggatcggagattagggttttccatgatttgcatacacac 42414172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 43907724 - 43907690
Alignment:
Q  174 gagattagggttttccatgacttgcaaacacactt 208  Q
    |||||||||||||||||||| ||||||||||||||    
T  43907724 gagattagggttttccatgatttgcaaacacactt 43907690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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