View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0695_low_7 (Length: 382)
Name: NF0695_low_7
Description: NF0695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0695_low_7 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 6935889 - 6935537
Alignment:
| Q |
1 |
ccttccaaccaattctattacaaggacgctggtaggattgttggttcatgcaatggattggtctgcatacaagattgttctttcacagctgagtatagcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6935889 |
ccttccaaccaattctattacaaggacgctggtaggattgttggttcatgcaatggattggtctgcatacaagattgttctttcacagctgagtatagcg |
6935790 |
T |
|
| Q |
101 |
agcatgctttctctttttggaacttcgccacaaggacaaaatccgaagcattggtgtcttttcgcagtaatcccacgctcnnnnnnnntataaatgtttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
6935789 |
agcatgctttctctttttggaacttcgccacaaggacaaaatccgaagcattggtgtcttttcgcagtaatcccacgctcaataaaaatataaatgtttg |
6935690 |
T |
|
| Q |
201 |
caacttcacttttggttatgataattcaacagacacttacaagttggtgttcttcagtttggaaagggacgacgaccttatgaaaaccgtgataagagtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6935689 |
caacttcacttttggttatgataattcaacagacacttacaagttggtgttcttcagtttggaaagggacgacgaccttatgaaaaccgtgataagagtt |
6935590 |
T |
|
| Q |
301 |
tttactttgggtgataatgattggagagacattgattgtttgcaagtggcatt |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6935589 |
tttactttgggtgataatgattggagagacattgattgtttgcaagtggcatt |
6935537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 189 - 353
Target Start/End: Complemental strand, 6943437 - 6943273
Alignment:
| Q |
189 |
tataaatgtttgcaacttcacttttggttatgataattcaacagacacttacaagttggtgttcttcagtttggaaagggacgacgaccttatgaaaacc |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| |
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|
| T |
6943437 |
tataaatgtttgcaacttcacttttggttatgataattcaacaaacacttacaagttggtgttgttcagttcggaaagggtcgacgaccttatgaaaacc |
6943338 |
T |
|
| Q |
289 |
gtgataagagtttttactttgggtgataatgattggagagacattgattgtttgcaagtggcatt |
353 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
6943337 |
gtggtaagagtttttactttgggtgataatgattggagagacattgattgtttgcatgtggcatt |
6943273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 6922020 - 6921691
Alignment:
| Q |
8 |
accaattctattacaaggacgctggtaggattgttggttcatgcaatggattggtctgcatacaagattgttctttcacagctgagtatagcgagcatgc |
107 |
Q |
| |
|
||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||| || |||||| ||| || | |
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|
| T |
6922020 |
accaattcttttacaaggatgctggtagggttgttggttcatgcaatggattggtctgcatgcaagattgttatttc---gcggagtatcacgaacactc |
6921924 |
T |
|
| Q |
108 |
tttctctttttggaacttcgccacaaggacaaaatccgaagcattggtgtcttttcgcagtaatcccacgctcnnnnnnnntataaatgtttgcaacttc |
207 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||| |||||| || | | |||||||||||||||| |
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|
| T |
6921923 |
gttctctttctggaatcctgccacaaggacaaaatctgaaacattggtgtcttttcgcaactatcccaagcccagg------aaaaatgtttgcaacttc |
6921830 |
T |
|
| Q |
208 |
acttttggttatgataattcaacagacacttacaagttggtgttcttcagtttggaaagggacga---cgaccttatgaaaaccgtgataagagttttta |
304 |
Q |
| |
|
|| ||||||||||||| ||||| ||||||||||||| | |||||||| ||||| ||||||| || ||||||||| ||| | |||||||||||| |
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|
| T |
6921829 |
acatttggttatgatatttcaatagacacttacaagattgtgttcttatgtttgaaaagggatgatagcgaccttattgcaacggccgtaagagttttta |
6921730 |
T |
|
| Q |
305 |
ctttgggtgataatgattggagagacattgattgtttgc |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6921729 |
ctttgggtgataatgattggagagacattgattgtttgc |
6921691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 6948550 - 6948221
Alignment:
| Q |
8 |
accaattctattacaaggacgctggtaggattgttggttcatgcaatggattggtctgcatacaagattgttctttcacagctgagtatagcgagcatgc |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| || || | |
|
|
| T |
6948550 |
accaattcccttacaaggacgctggtagggttgttggttcatgcaatggattggtctgcatacaagattcttctttcaccgctgagtatcatgaacactc |
6948451 |
T |
|
| Q |
108 |
tttctctttttggaacttcgccacaaggacaaaatccgaagcattggtgtcttttcgcagtaatcccacgctcnnnnnnnntataaatgtttgcaacttc |
207 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| |||||||||||||||||| ||||| || | | |||| ||||||| ||| |
|
|
| T |
6948450 |
attctctttttggaatcctgccacaaggacaaaatctgaaacattggtgtcttttcgcaactatcccgagcccaag------aaaaatatttgcaagttc |
6948357 |
T |
|
| Q |
208 |
acttttggttatgataattcaacagacacttacaagttggtgttcttcagtttggaaagggacgacgaccttatgaaaaccgtgataagagtttttactt |
307 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||| | ||||| || || || ||| ||| | ||| |||| | ||||| | | | | ||||||||| |
|
|
| T |
6948356 |
gcctttggttatgataattcaatagacacttacaaggttgtgttgttatgtatgaaaatggatggcgaacttaatacaaccgcggttaaactttttactt |
6948257 |
T |
|
| Q |
308 |
tgggtgataatgattggagagacattgattgtttgc |
343 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6948256 |
tgggtgataatgattggagagaaattgattgtttgc |
6948221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 41 - 341
Target Start/End: Complemental strand, 6955153 - 6954862
Alignment:
| Q |
41 |
ttggttcatgcaatggattggtctgcatacaagattgttctttcacagctgagtatagcgagcatgctttctctttttggaacttcgccacaaggacaaa |
140 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| ||| ||||| | ||||||||||||||| |||||||||||||| |
|
|
| T |
6955153 |
ttggttcatgtaatgggttggtctgcatgcaagattgttctttcactgctgaatatcaggagcactcgttctctttttggaaccctgccacaaggacaaa |
6955054 |
T |
|
| Q |
141 |
atccgaagcattggtgtcttttcgcagtaatcccacgctcnnnnnnnntataaatgtttgcaacttcacttttggttatgataattcaacagacacttac |
240 |
Q |
| |
|
|| |||||||| |||||||||||| | || ||| | | |||| ||||| ||| | |||||||||||||||||||||||||||||| |
|
|
| T |
6955053 |
gtctgaagcattattgtcttttcgcaattatgccaag---------gagaaaaataactgcaagttcgcgtttggttatgataattcaacagacacttac |
6954963 |
T |
|
| Q |
241 |
aagttggtgttcttcagtttggaaagggacgacgaccttatgaaaaccgtgataagagtttttactttgggtgataatgattggagagacattgattgtt |
340 |
Q |
| |
|
||| ||||||| || ||||| ||||||| | || ||||| |||| | | | ||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
6954962 |
aagatggtgttgttatgtttgaaaagggatggtgagcttattgcaaccacggttaaagtttttactttgggtgataatgtttggagagatattgattgtt |
6954863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 1986628 - 1986299
Alignment:
| Q |
8 |
accaattctattacaaggacgctggtaggattgttggttcatgcaatggattggtctgcatacaagattgttctttcacagctgagtatagcgagcatgc |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| | | || | |
|
|
| T |
1986628 |
accaattcttttacaaggacgctggtagggttgttggttcatgcaatggattggtctgtattcaagattgttctttcactgctgagtatcacaaacactc |
1986529 |
T |
|
| Q |
108 |
tttctctttttggaacttcgccacaaggacaaaatccgaagcattggtgtcttttcgcagtaatcccacgctcnnnnnnnntataaatgtttgcaacttc |
207 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||| || | | |||| ||||||| ||| |
|
|
| T |
1986528 |
gttctctttttggaatccttccacaaggacaaaatatgaagcattggtgtcttttcgcaactatcccaagcccaag------aaaaatatttgcaagttc |
1986435 |
T |
|
| Q |
208 |
acttttggttatgataattcaacagacacttacaagttggtgttcttcagtttggaaagggacgacgaccttatgaaaaccgtgataagagtttttactt |
307 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| | |||| || ||||| ||||||| | || || || | ||||| ||||||||||||||| |
|
|
| T |
1986434 |
gcgtttggttatgataattcaacagacacttacaagattttgttgttatgtttgaaaagggatggtgagctgattacaaccgccgtaagagtttttactt |
1986335 |
T |
|
| Q |
308 |
tgggtgataatgattggagagacattgattgtttgc |
343 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
1986334 |
tgggttataatgattggagagaaattgattgtttgc |
1986299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 341
Target Start/End: Complemental strand, 15572386 - 15572253
Alignment:
| Q |
211 |
tttggttatgataattcaacagacacttacaagttggtgttcttcagtttggaaagggacga---cgaccttatgaaaaccgtgataagagtttttactt |
307 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||| || ||| | ||||||| | |||| |||| | | ||||| ||||||| ||||||| |
|
|
| T |
15572386 |
tttggttatgataattcaaccgacacttacaaggtggtgttgttatgttggaaaagggatggtggcgacgttattacatccgtggtaagagtatttactt |
15572287 |
T |
|
| Q |
308 |
tgggtgataatgattggagagacattgattgttt |
341 |
Q |
| |
|
|||||||||| | ||||||||| ||||||||||| |
|
|
| T |
15572286 |
tgggtgataacgtttggagagatattgattgttt |
15572253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 15572576 - 15572427
Alignment:
| Q |
12 |
attctattacaaggacgctggtaggattgttggttcatgcaatggattggtctgcatacaagattgttctttcacagctgagtatagcgagcatgctttc |
111 |
Q |
| |
|
|||| ||| |||||||| |||| || ||||||||||||||||||||||||||||| | ||| |||||||||| | |||||||||| ||| | | ||| |
|
|
| T |
15572576 |
attcaatttcaaggacggtggtggggttgttggttcatgcaatggattggtctgcttgcaaagttgttctttcgctgctgagtataccgactactccttc |
15572477 |
T |
|
| Q |
112 |
tctttttggaacttcgccacaaggacaaaatccgaagcattggtgtcttt |
161 |
Q |
| |
|
| ||| |||||| ||||||||||| |||||| ||| |||| || ||||| |
|
|
| T |
15572476 |
tgtttctggaaccccgccacaaggaaaaaatctgaaacattagtctcttt |
15572427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 12820365 - 12820321
Alignment:
| Q |
205 |
ttcacttttggttatgataattcaacagacacttacaagttggtg |
249 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
12820365 |
ttcacatttggttatgataattcaactgacacttacaaggtggtg |
12820321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 22080468 - 22080516
Alignment:
| Q |
202 |
aacttcacttttggttatgataattcaacagacacttacaagttggtgt |
250 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| ||| |||||| |
|
|
| T |
22080468 |
aacttcacgtttggttatgataattcaacagaaacttataaggtggtgt |
22080516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 13417389 - 13417350
Alignment:
| Q |
211 |
tttggttatgataattcaacagacacttacaagttggtgt |
250 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
13417389 |
tttggttatgataattcaacggacacttacaaggtggtgt |
13417350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 18515491 - 18515463
Alignment:
| Q |
37 |
attgttggttcatgcaatggattggtctg |
65 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
18515491 |
attgttggttcatgcaatggattggtctg |
18515463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 14514293 - 14514353
Alignment:
| Q |
37 |
attgttggttcatgcaatggattggtctgcatacaagattgttctttcacagctgagtata |
97 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | || | |||||||||||| ||| |||||| |
|
|
| T |
14514293 |
attgttggttcatgcaatggattgatctgcttgcatggttgttctttcactgctaagtata |
14514353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 5437279 - 5437247
Alignment:
| Q |
205 |
ttcacttttggttatgataattcaacagacact |
237 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
5437279 |
ttcacttttggttatgatgattcaacagacact |
5437247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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