View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0695_low_8 (Length: 357)
Name: NF0695_low_8
Description: NF0695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0695_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 39296569 - 39296878
Alignment:
| Q |
20 |
aagttagtgtcacagcaccatcaaatcatgcttcacttattaaatttgaaggtggtgttaaagcaggtttattaggtagaattagtccatcaccattatc |
119 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39296569 |
aagttagtgtcacagcaccatcaaatcatgcttcaattattaaatttgaaggtggtgttaaagcaggtttattaggtagaataagtccatcaccattatc |
39296668 |
T |
|
| Q |
120 |
agaatggcatgcatttggaatcatatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttcacct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296669 |
agaatggcatgcatttggaatcatatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttcacct |
39296768 |
T |
|
| Q |
220 |
cctaaacatctttggattcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctggaattt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296769 |
cctaaacatctttggattcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctggaattt |
39296868 |
T |
|
| Q |
320 |
gtgtgttcct |
329 |
Q |
| |
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|||||||||| |
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| T |
39296869 |
gtgtgttcct |
39296878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 39289689 - 39289996
Alignment:
| Q |
20 |
aagttagtgtcacagcaccatcaaatcatgcttcacttattaaatttgaaggtggtgttaaagcaggtttattaggtagaattagtccatcaccattatc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39289689 |
aagttagtgtcacagcaccatcaaatcatgcttcaattattaaatttgaaggtggtgttaaagcaggtttattaggtagaataagtccatcaccattatc |
39289788 |
T |
|
| Q |
120 |
agaatggcatgcatttggaatcatatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttcacct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289789 |
agaatggcatgcatttggaatcatatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttcacct |
39289888 |
T |
|
| Q |
220 |
cctaaacatctttggattcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctggaattt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39289889 |
cctaaacatctttggattcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctgggattt |
39289988 |
T |
|
| Q |
320 |
gtgtgttc |
327 |
Q |
| |
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|||||||| |
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|
| T |
39289989 |
gtgtgttc |
39289996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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