View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0695_low_9 (Length: 350)

Name: NF0695_low_9
Description: NF0695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0695_low_9
NF0695_low_9
[»] chr7 (25 HSPs)
chr7 (76-286)||(25499053-25499265)
chr7 (76-287)||(25493815-25494028)
chr7 (76-183)||(42167591-42167700)
chr7 (79-287)||(576028-576216)
chr7 (79-286)||(557845-558032)
chr7 (79-183)||(16648503-16648609)
chr7 (79-183)||(17622864-17622970)
chr7 (76-183)||(44655679-44655788)
chr7 (79-183)||(32148557-32148663)
chr7 (79-183)||(42208973-42209085)
chr7 (193-286)||(32148476-32148569)
chr7 (79-179)||(38011662-38011760)
chr7 (193-286)||(42208892-42208985)
chr7 (218-286)||(38011777-38011845)
chr7 (193-286)||(16648422-16648515)
chr7 (193-286)||(17622783-17622876)
chr7 (218-289)||(44655595-44655666)
chr7 (130-183)||(26456872-26456925)
chr7 (219-286)||(26456939-26457007)
chr7 (133-284)||(11726511-11726661)
chr7 (218-286)||(42167713-42167781)
chr7 (240-283)||(30027419-30027462)
chr7 (249-286)||(42162378-42162415)
chr7 (130-174)||(11726398-11726442)
chr7 (251-279)||(31904631-31904659)
[»] scaffold0121 (1 HSPs)
scaffold0121 (79-287)||(11399-11609)
[»] scaffold0124 (1 HSPs)
scaffold0124 (79-286)||(39441-39650)
[»] chr1 (21 HSPs)
chr1 (105-286)||(17721717-17721899)
chr1 (79-183)||(27178943-27179049)
chr1 (79-183)||(27194944-27195050)
chr1 (79-183)||(26711450-26711556)
chr1 (110-270)||(16498728-16498889)
chr1 (79-183)||(33498392-33498498)
chr1 (79-183)||(15716704-15716810)
chr1 (79-183)||(15711123-15711229)
chr1 (193-286)||(15711042-15711135)
chr1 (193-286)||(15716623-15716716)
chr1 (207-286)||(27179051-27179130)
chr1 (124-199)||(9088652-9088727)
chr1 (207-286)||(26711558-26711637)
chr1 (207-286)||(27195052-27195131)
chr1 (79-139)||(33491497-33491559)
chr1 (188-286)||(33492999-33493097)
chr1 (135-183)||(33492968-33493016)
chr1 (126-177)||(3343895-3343946)
chr1 (237-287)||(3343996-3344046)
chr1 (218-286)||(33498511-33498579)
chr1 (226-286)||(49624707-49624767)
[»] chr3 (36 HSPs)
chr3 (79-187)||(2174191-2174301)
chr3 (79-187)||(13990908-13991018)
chr3 (79-187)||(13985336-13985446)
chr3 (79-183)||(3110482-3110588)
chr3 (79-183)||(3112099-3112205)
chr3 (79-183)||(23338909-23339015)
chr3 (79-183)||(23344456-23344562)
chr3 (79-183)||(40800611-40800717)
chr3 (79-183)||(9730286-9730392)
chr3 (79-183)||(48216309-48216415)
chr3 (79-183)||(40802535-40802641)
chr3 (100-187)||(2168645-2168734)
chr3 (94-183)||(13980644-13980735)
chr3 (152-279)||(20454624-20454750)
chr3 (200-286)||(13992062-13992148)
chr3 (193-286)||(13985259-13985352)
chr3 (193-286)||(13990831-13990924)
chr3 (198-286)||(2168723-2168811)
chr3 (207-286)||(13980737-13980816)
chr3 (193-286)||(23344375-23344468)
chr3 (81-179)||(34578792-34578892)
chr3 (198-286)||(2174290-2174378)
chr3 (79-153)||(9721536-9721612)
chr3 (193-286)||(23338828-23338921)
chr3 (207-287)||(9730394-9730474)
chr3 (106-175)||(13991988-13992059)
chr3 (207-286)||(3110590-3110669)
chr3 (207-286)||(40800719-40800798)
chr3 (188-286)||(9724686-9724783)
chr3 (233-286)||(48216443-48216496)
chr3 (207-287)||(3112207-3112287)
chr3 (218-286)||(40802654-40802722)
chr3 (150-183)||(9724670-9724703)
chr3 (81-169)||(17033242-17033331)
chr3 (216-287)||(21473103-21473174)
chr3 (135-171)||(19307751-19307787)
[»] scaffold0004 (4 HSPs)
scaffold0004 (79-183)||(350965-351071)
scaffold0004 (79-180)||(345644-345747)
scaffold0004 (207-286)||(345752-345831)
scaffold0004 (207-286)||(351073-351152)
[»] chr5 (14 HSPs)
chr5 (79-183)||(28366954-28367060)
chr5 (79-183)||(28375694-28375800)
chr5 (79-286)||(30963147-30963332)
chr5 (94-183)||(1536543-1536634)
chr5 (79-183)||(30927356-30927460)
chr5 (105-183)||(34647933-34648013)
chr5 (207-287)||(1536636-1536716)
chr5 (79-175)||(14663971-14664064)
chr5 (207-286)||(28375802-28375881)
chr5 (240-286)||(14664069-14664115)
chr5 (233-286)||(30957704-30957757)
chr5 (226-286)||(24111232-24111292)
chr5 (207-286)||(28367062-28367141)
chr5 (226-285)||(34648026-34648089)
[»] chr4 (16 HSPs)
chr4 (79-183)||(6156631-6156737)
chr4 (79-183)||(6162328-6162434)
chr4 (79-177)||(53982180-53982280)
chr4 (79-183)||(20192565-20192671)
chr4 (79-183)||(20197929-20198035)
chr4 (227-286)||(7156032-7156092)
chr4 (198-286)||(53982094-53982182)
chr4 (207-286)||(20192673-20192752)
chr4 (207-286)||(20198037-20198116)
chr4 (193-287)||(6156549-6156643)
chr4 (193-286)||(6162247-6162340)
chr4 (235-286)||(7739865-7739916)
chr4 (129-168)||(12733943-12733982)
chr4 (240-286)||(19582035-19582081)
chr4 (255-289)||(28295355-28295389)
chr4 (227-271)||(12734040-12734084)
[»] chr2 (31 HSPs)
chr2 (79-183)||(630811-630917)
chr2 (79-183)||(636362-636468)
chr2 (79-183)||(14893310-14893416)
chr2 (79-183)||(22430428-22430534)
chr2 (79-183)||(22436022-22436128)
chr2 (79-289)||(26694149-26694339)
chr2 (79-183)||(7917391-7917497)
chr2 (79-183)||(22425058-22425164)
chr2 (79-183)||(26702329-26702435)
chr2 (79-183)||(43777071-43777177)
chr2 (79-183)||(7909936-7910042)
chr2 (79-183)||(14898863-14898969)
chr2 (129-286)||(19052368-19052526)
chr2 (79-183)||(43771545-43771649)
chr2 (79-171)||(1519238-1519332)
chr2 (193-287)||(630729-630823)
chr2 (79-183)||(1525722-1525834)
chr2 (193-286)||(636281-636374)
chr2 (195-286)||(14898782-14898873)
chr2 (193-286)||(22430347-22430440)
chr2 (193-286)||(22435941-22436034)
chr2 (193-286)||(43776990-43777083)
chr2 (207-286)||(7910044-7910123)
chr2 (207-286)||(7917499-7917578)
chr2 (193-288)||(22424975-22425070)
chr2 (188-286)||(1525641-1525739)
chr2 (193-286)||(43771464-43771557)
chr2 (193-289)||(1519138-1519234)
chr2 (218-286)||(14893225-14893293)
chr2 (226-274)||(11147064-11147112)
chr2 (258-286)||(44472788-44472816)
[»] chr6 (9 HSPs)
chr6 (76-177)||(26680656-26680759)
chr6 (79-183)||(14856017-14856121)
chr6 (79-183)||(14847159-14847265)
chr6 (199-286)||(6933039-6933126)
chr6 (105-286)||(10345722-10345903)
chr6 (198-286)||(14855936-14856024)
chr6 (232-289)||(6924846-6924903)
chr6 (198-287)||(14847077-14847166)
chr6 (198-286)||(26680570-26680658)
[»] chr8 (10 HSPs)
chr8 (79-183)||(12756135-12756241)
chr8 (79-183)||(24052007-24052113)
chr8 (76-180)||(41043562-41043668)
chr8 (81-186)||(41048929-41049036)
chr8 (207-286)||(12756243-12756322)
chr8 (207-286)||(24052115-24052194)
chr8 (218-289)||(41043475-41043546)
chr8 (79-171)||(2232107-2232200)
chr8 (135-165)||(24042894-24042924)
chr8 (249-286)||(41048858-41048895)
[»] scaffold0211 (2 HSPs)
scaffold0211 (79-183)||(26984-27090)
scaffold0211 (193-288)||(26901-26996)
[»] scaffold0169 (4 HSPs)
scaffold0169 (88-183)||(11038-11135)
scaffold0169 (188-286)||(8695-8793)
scaffold0169 (108-183)||(8776-8853)
scaffold0169 (188-259)||(10984-11055)
[»] scaffold1317 (1 HSPs)
scaffold1317 (76-122)||(2009-2055)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 8e-89; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 76 - 286
Target Start/End: Complemental strand, 25499265 - 25499053
Alignment:
Q  76 agcagagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgact 173  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25499265 agcagagagaatagagatagaagaaagaggaatatattattctcttgtgatgtatcattaggttacatatgagctctatttatagagaaatacaatgact 25499166  T
Q  174 tggggagcaaacaccaataacttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttat 273  Q
    |||||||||| ||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  25499165 tggggagcaagcaccaatgacttagggagcaagcacaatatggtccaataagctaatagtatgacccaataacctaattgctatatggacatccacttat 25499066  T
Q  274 aatattcataaca 286  Q
    |||||||||||||    
T  25499065 aatattcataaca 25499053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 76 - 287
Target Start/End: Complemental strand, 25494028 - 25493815
Alignment:
Q  76 agcagagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgact 173  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||  |||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  25494028 agcagagagaatagagatagaagaaagaggaatatattattctcttgtgatgtatcattatgttacatatgagctctatttatagagaaatacaatgact 25493929  T
Q  174 tggggagcaaacaccaataacttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttat 273  Q
    |||||||||| ||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||    
T  25493928 tggggagcaagcaccaatgacttagggagcaagcacaatatggtccaataagctaatagtatgacccattaacctaattgctatatggacatccacttat 25493829  T
Q  274 aatattcataacaa 287  Q
    ||||||||||||||    
T  25493828 aatattcataacaa 25493815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 42167591 - 42167700
Alignment:
Q  76 agcagagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgact 173  Q
    |||||||||||||||||||||| |||||||||||| ||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42167591 agcagagagaatagagatagaagaaagaggattatgttattttcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgact 42167690  T
Q  174 tggggagcaa 183  Q
    ||||||||||    
T  42167691 tggggagcaa 42167700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 79 - 287
Target Start/End: Original strand, 576028 - 576216
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  576028 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtacaattaggttacatatgaactctatttatagagaaatacaatgacttgg 576127  T
Q  177 ggagcaaacaccaataacttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataat 276  Q
    | ||||| ||                      |||| ||| ||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  576128 gaagcaatca----------------------caatatggcccaataagctaatagtatgacccaataaccgaattgttatatagacatccacttataat 576205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 286
Target Start/End: Original strand, 557845 - 558032
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  557845 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtacaattaggttacatatgaactctatttatagagaaatacaatgacttgg 557944  T
Q  177 ggagcaaacaccaataacttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataat 276  Q
    | ||||| ||                      |||| ||| ||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  557945 gaagcaagca----------------------caatatggcccaataagctaatagtatgacccaataaccgaattgttatatagacatccacttataat 558022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 16648609 - 16648503
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16648609 agagagaatagagagagaagaaagaggattatatttttctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 16648510  T
Q  177 ggagcaa 183  Q
    |||||||    
T  16648509 ggagcaa 16648503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 17622970 - 17622864
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17622970 agagagaatagagagagaagaaagaggattatatttttctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 17622871  T
Q  177 ggagcaa 183  Q
    |||||||    
T  17622870 ggagcaa 17622864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 44655788 - 44655679
Alignment:
Q  76 agcagagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgact 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  44655788 agcagagagaatagagatagaataaagaggattatattattctcttgtgatgtataattaggttacatatgagcttaatttatagagaaatacaaagact 44655689  T
Q  174 tggggagcaa 183  Q
    |||| |||||    
T  44655688 tgggtagcaa 44655679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 32148663 - 32148557
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| |||||||||||||||||| |||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  32148663 agagagaatagagagagaagaaagaggattatattattttcttgtgatgtataattaggttacatataagctctatttatagagaaatacaatgactttg 32148564  T
Q  177 ggagcaa 183  Q
    |||||||    
T  32148563 ggagcaa 32148557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 42209085 - 42208973
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataatta------ggttacatatgagctctatttatagagaaatacaatg 170  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||  |||||||||||      |||||||||||||||||||||||||||||||||||||    
T  42209085 agagagaatagagatagaagaaagatgattatattattctcttgtgatgtataattataattaggttacatatgagctctatttatagagaaatacaatg 42208986  T
Q  171 acttggggagcaa 183  Q
    |||||||||||||    
T  42208985 acttggggagcaa 42208973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 32148569 - 32148476
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| |||||||| |||||| ||| |||||||||||| | ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  32148569 actttgggagcaagcacaatatggcccaataaactaacaatatgatccaataacccaattgttatatggacatccacttgtaatattcataaca 32148476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 38011662 - 38011760
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgggg 178  Q
    |||||||||||||  |||| ||||||||||||||||||||||  || |  ||||||||||||||||||||||||  |||||| |||||||||||||||||    
T  38011662 agagagaatagagtgagaagaaagaggattatattattctct--atattcaattaggttacatatgagctctatagatagagtaatacaatgacttgggg 38011759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 42208985 - 42208892
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| |||||||| |||||| ||||||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  42208985 acttggggagcaagcacaatatggtccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 42208892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 38011777 - 38011845
Alignment:
Q  218 ccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||    
T  38011777 ccaataaactaagagtatgacctaataacccaattgttatatggacatccacttctaatattcataaca 38011845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 16648515 - 16648422
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| |||||||| |||||| ||| ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  16648515 acttggggagcaagcacaatatggcccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 16648422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 17622876 - 17622783
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| |||||||| |||||| ||| ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  17622876 acttggggagcaagcacaatatggcccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 17622783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 44655666 - 44655595
Alignment:
Q  218 ccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataacaaat 289  Q
    ||||||| |||| ||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||    
T  44655666 ccaataagctaacagtatgatccaataacccaattgctatatggacatccacttgtaatattcataacaaat 44655595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 26456872 - 26456925
Alignment:
Q  130 attaggttacatatgagctctatttatagagaaatacaatgacttggggagcaa 183  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  26456872 attaagttacatatgagctctatttatagagaaatacaatgatttggagagcaa 26456925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 26456939 - 26457007
Alignment:
Q  219 caataaactaatagtatgacccaataacctaattgt-tatatggacatccacttataatattcataaca 286  Q
    |||||| |||||||||| ||||||||| | |||||  ||||||||||||||||||||||||||||||||    
T  26456939 caataagctaatagtataacccaataatccaattgcctatatggacatccacttataatattcataaca 26457007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 284
Target Start/End: Original strand, 11726511 - 11726661
Alignment:
Q  133 aggttacatatgagctctatttatagagaaatacaatgacttggggagcaaacaccaataacttagggagcaaacacaatgtggtccaataaactaatag 232  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| | | ||| || |||| |||| || | | | || |||    | || | | |||||||    
T  11726511 aggttacatgtgagctctatttatagagaaatacaataacttgagaaacaagcatcaatgacttcggaaactagcaaaatagtatgca-tgagctaatag 11726609  T
Q  233 tatgacccaataacctaattgttatatggacatccacttataatattcataa 284  Q
    | || |||||||||| | |||||||||||| |||||||||||||||||||||    
T  11726610 tgtggcccaataacccagttgttatatggatatccacttataatattcataa 11726661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 42167713 - 42167781
Alignment:
Q  218 ccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||||||||| ||||||| | ||||||  ||||| ||||||||||||||||  ||||||||||||||    
T  42167713 ccaataaactaacagtatgatcaaataactcaattgctatatggacatccactggtaatattcataaca 42167781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 30027419 - 30027462
Alignment:
Q  240 caataacctaattgttatatggacatccacttataatattcata 283  Q
    |||||||  ||||||||||| |||||||||||||||||||||||    
T  30027419 caataactcaattgttatatagacatccacttataatattcata 30027462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 42162378 - 42162415
Alignment:
Q  249 aattgttatatggacatccacttataatattcataaca 286  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  42162378 aattgctatatggacatccacttgtaatattcataaca 42162415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 11726398 - 11726442
Alignment:
Q  130 attaggttacatatgagctctatttatagagaaatacaatgactt 174  Q
    |||||||||||| ||| ||||||||||| ||||| ||||||||||    
T  11726398 attaggttacatgtgacctctatttataaagaaacacaatgactt 11726442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 279
Target Start/End: Complemental strand, 31904659 - 31904631
Alignment:
Q  251 ttgttatatggacatccacttataatatt 279  Q
    |||||||||||||||||||||||||||||    
T  31904659 ttgttatatggacatccacttataatatt 31904631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 79 - 287
Target Start/End: Original strand, 11399 - 11609
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| |||||||||||||||||||||||   |||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  11399 agagagaatagagagagaagaaagaggattatattattctcttagtatgtaccattaggttacatatgagctctatttatagagaaatacaatgacttgg 11498  T
Q  177 ggagcaaacaccaataacttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataat 276  Q
    ||||||| ||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  11499 ggagcaagcaccaatgacttagggagcaaccacaatatggtccaataagctaatagtatgacccaataacctaattgctatgtggacatccacttataat 11598  T
Q  277 attcataacaa 287  Q
    |||||||||||    
T  11599 attcataacaa 11609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 79 - 286
Target Start/End: Complemental strand, 39650 - 39441
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||| ||| |||| |||||||||||||||||||||||   |||||  ||||||||||||||||||||||||||||||||||||||||||||||     
T  39650 agagagaataaagagagaagaaagaggattatattattctcttagtatgtaccattaggttacatatgagctctatttatagagaaatacaatgacttga 39551  T
Q  177 ggagcaaacaccaataacttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataat 276  Q
    ||||||| ||||||| ||||||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39550 ggagcaagcaccaatgacttagggagcaagcacaatatggtccaataagctaatagtacgacccaataacctaattgttatatggacatccacttataat 39451  T
Q  277 attcataaca 286  Q
    ||||||||||    
T  39450 attcataaca 39441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 105 - 286
Target Start/End: Complemental strand, 17721899 - 17721717
Alignment:
Q  105 gattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaaacaccaataacttagggag 202  Q
    ||||||||||||||||||  ||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||    
T  17721899 gattatattattctcttgtgatgtacaattaggttacatacgagctctatttatagagaaatataatgacttggggaacaaacaccaatgactt-gggag 17721801  T
Q  203 caaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||||||| | | ||||||| ||| |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  17721800 caaacacaatatagcccaataagctagtagtatgacccaataaccaaattcttacatggacatccacttataatattcataaca 17721717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 27178943 - 27179049
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27178943 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 27179042  T
Q  177 ggagcaa 183  Q
    |||||||    
T  27179043 ggagcaa 27179049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 27194944 - 27195050
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27194944 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 27195043  T
Q  177 ggagcaa 183  Q
    |||||||    
T  27195044 ggagcaa 27195050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 26711450 - 26711556
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26711450 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtctaattaggttacatatgagctctatttatagagaaatacaatgacttgg 26711549  T
Q  177 ggagcaa 183  Q
    |||||||    
T  26711550 ggagcaa 26711556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 110 - 270
Target Start/End: Original strand, 16498728 - 16498889
Alignment:
Q  110 tattattctcttgatgtat--aattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaaacaccaataacttagggagcaaac 207  Q
    |||||||||||||  ||||  ||||||||||||||||||||||||||||||||| ||||||||||||||  | ||| ||||||| |||| |||||||| |    
T  16498728 tattattctcttgtggtatgcaattaggttacatatgagctctatttatagagagatacaatgacttggaaaacaagcaccaatgactt-gggagcaagc 16498826  T
Q  208 acaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccact 270  Q
    ||||| ||| ||||||| |||||||||| ||| ||||||| ||||| ||||||||||||||||    
T  16498827 acaatatggcccaataagctaatagtataacctaataacccaattgctatatggacatccact 16498889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 33498392 - 33498498
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  33498392 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaggttacatataagctccatttatagagaaatacaatgacttgg 33498491  T
Q  177 ggagcaa 183  Q
    |||||||    
T  33498492 ggagcaa 33498498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 15716810 - 15716704
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    ||||||| |||||| |||| ||||| ||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15716810 agagagagtagagagagaagaaagaagattatattattctcttgtgatgtataattacgttacatatgagctctatttatagagaaatacaatgacttgg 15716711  T
Q  177 ggagcaa 183  Q
    |||||||    
T  15716710 ggagcaa 15716704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 15711229 - 15711123
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    ||||||| |||||| |||| ||||| ||||||||||||||||||  ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  15711229 agagagagtagagagagaagaaagaagattatattattctcttgtgatgtataattacgttacatatgagctctatttataaagaaatacaatgacttgg 15711130  T
Q  177 ggagcaa 183  Q
    |||||||    
T  15711129 ggagcaa 15711123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 15711135 - 15711042
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| |||||||| |||||| |||||||||||||||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  15711135 acttggggagcaagcacaatatggtccaataaactaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 15711042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 15716716 - 15716623
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| |||||||| |||||| ||| ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  15716716 acttggggagcaagcacaatatggcccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 15716623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 27179051 - 27179130
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||| ||| ||||||| |||| | ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  27179051 cacaatatggcccaataagctaacaatatgatccaataacccaattgttatatggacatccacttgtaatattcataaca 27179130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 9088727 - 9088652
Alignment:
Q  124 tgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaaacaccaataacttagg 199  Q
    |||| |||||| |||||||| ||||||||||||||||||||| ||||| ||||||| ||||||||||  |||||||    
T  9088727 tgtacaattagattacatataagctctatttatagagaaatataatgatttggggaacaaacaccaacgacttagg 9088652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 26711558 - 26711637
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||| ||| ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  26711558 cacaatatggcccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 26711637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 27195052 - 27195131
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||| ||| ||||||| |||| | ||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  27195052 cacaatatggcccaataagctaacaatatgatccaataacccaattgttatatagacatccacttgtaatattcataaca 27195131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 33491497 - 33491559
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctct--tgatgtataattaggttac 139  Q
    |||||||||||||| |||| ||||||||||||||||||||||  |||||||||||||||||||    
T  33491497 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaggttac 33491559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 286
Target Start/End: Original strand, 33492999 - 33493097
Alignment:
Q  188 caataacttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| ||||||||||||| |||||| | | ||||||| |||| | ||||| |||| |||  ||||| ||||||||||||||||| ||||||||||||||    
T  33492999 caatgacttagggagcaagcacaatatagcccaataagctaacaatatgatccaacaactcaattgctatatggacatccacttgtaatattcataaca 33493097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 33492968 - 33493016
Alignment:
Q  135 gttacatatgagctctatttatagagaaatacaatgacttggggagcaa 183  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  33492968 gttacatataagctctatttatagagaaatacaatgacttagggagcaa 33493016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 3343895 - 3343946
Alignment:
Q  126 tataattaggttacatatgagctctatttatagagaaatacaatgacttggg 177  Q
    |||||||||||||||||| || |||||||||| |||||||||||||||||||    
T  3343895 tataattaggttacatataagttctatttatatagaaatacaatgacttggg 3343946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 3343996 - 3344046
Alignment:
Q  237 acccaataacctaattgttatatggacatccacttataatattcataacaa 287  Q
    ||||||||||| ||||||||||||||||| | |||||||||||||||||||    
T  3343996 acccaataacccaattgttatatggacattctcttataatattcataacaa 3344046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 33498511 - 33498579
Alignment:
Q  218 ccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    ||||||| |||| | ||||| |||| |||| ||||| ||||||||||||||||| ||||||||||||||    
T  33498511 ccaataagctaaaaatatgatccaacaacccaattgctatatggacatccacttgtaatattcataaca 33498579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 49624707 - 49624767
Alignment:
Q  226 ctaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    ||||||||||||| |||||| |  || |||| |||||||||||||||||| ||||||||||    
T  49624707 ctaatagtatgactcaataatcatatagttaaatggacatccacttataacattcataaca 49624767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 2174191 - 2174301
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2174191 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 2174290  T
Q  177 ggagcaaacac 187  Q
    |||||||||||    
T  2174291 ggagcaaacac 2174301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 79 - 187
Target Start/End: Complemental strand, 13991018 - 13990908
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13991018 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 13990919  T
Q  177 ggagcaaacac 187  Q
    |||||||||||    
T  13990918 ggagcaaacac 13990908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 187
Target Start/End: Complemental strand, 13985446 - 13985336
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13985446 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaggttacatatgatctctatttatagagaaatacaatgacttgg 13985347  T
Q  177 ggagcaaacac 187  Q
    |||||||||||    
T  13985346 ggagcaaacac 13985336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 3110482 - 3110588
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3110482 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaagttacatatgagctctatttatagagaaatacaatgacttgg 3110581  T
Q  177 ggagcaa 183  Q
    |||||||    
T  3110582 ggagcaa 3110588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 3112099 - 3112205
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3112099 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaagttacatatgagctctatttatagagaaatacaatgacttgg 3112198  T
Q  177 ggagcaa 183  Q
    |||||||    
T  3112199 ggagcaa 3112205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 23339015 - 23338909
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23339015 agagagaatagagagagaagaaagaggattatattattctcttgtgatctataattaggttacatatgagctctatttatagagaaatacaatgacttgg 23338916  T
Q  177 ggagcaa 183  Q
    |||||||    
T  23338915 ggagcaa 23338909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 23344562 - 23344456
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23344562 agagagaatagagagagaagaaagaggattatattattctcttgtgatctataattaggttacatatgagctctatttatagagaaatacaatgacttgg 23344463  T
Q  177 ggagcaa 183  Q
    |||||||    
T  23344462 ggagcaa 23344456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 40800611 - 40800717
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40800611 agagagaatagagagagaagaaagatgattatattattctcttgttatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 40800710  T
Q  177 ggagcaa 183  Q
    |||||||    
T  40800711 ggagcaa 40800717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 9730286 - 9730392
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  9730286 agagagaatagagagagaagaaagaggattatattattctcttgtcatgtataattagattacatatgagctctatttatagagaaatacaatgatttgg 9730385  T
Q  177 ggagcaa 183  Q
    |||||||    
T  9730386 ggagcaa 9730392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 48216309 - 48216415
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48216309 agagagaatagagagagaagaaagatgattatattattctcttgtgatatataattaggttacatatgagctctatttatagagaaatacaatgacttgg 48216408  T
Q  177 ggagcaa 183  Q
    |||||||    
T  48216409 ggagcaa 48216415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 40802535 - 40802641
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40802535 agagagaatagagagagaagaaagatgattatattattctcttgtgatgtataattaagttacatatgagctctatttatagagaaatacaatgacttgg 40802634  T
Q  177 ggagcaa 183  Q
    | |||||    
T  40802635 gaagcaa 40802641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 2168645 - 2168734
Alignment:
Q  100 aagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaaacac 187  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2168645 aagaggattatattattctcttgtgatgtataattaggctacatatgagctctatttatagagaaatacaatgacttggggagcaaacac 2168734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 13980644 - 13980735
Alignment:
Q  94 agaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaa 183  Q
    |||| ||||| ||||||||||||||||||  ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13980644 agaagaaagatgattatattattctcttggtatgtacaattagattacatatgagctctatttatagagaaatacaatgacttggggagcaa 13980735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 152 - 279
Target Start/End: Complemental strand, 20454750 - 20454624
Alignment:
Q  152 tttatagagaaatacaatgacttggggagcaaacaccaataacttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaat 251  Q
    |||||||| |||||||| |||||||||| ||| |||||||||||| | || ||| |||||| |    ||||||| ||||||||||| ||||||||| |||    
T  20454750 tttatagaaaaatacaaagacttgggga-caagcaccaataacttggagatcaagcacaatataacacaataaattaatagtatgatccaataacccaat 20454652  T
Q  252 tgttatatggacatccacttataatatt 279  Q
    || |||||||||||||||||||||||||    
T  20454651 tgctatatggacatccacttataatatt 20454624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 200 - 286
Target Start/End: Original strand, 13992062 - 13992148
Alignment:
Q  200 gagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||| |||||| ||  ||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  13992062 gagcaagcacaatatgacccaataagctaatagtatgacccaataacccaattgctatatagacatccacttataatattcataaca 13992148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 13985352 - 13985259
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| ||||||||||||||| ||| ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  13985352 acttggggagcaaacacaatatggcccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 13985259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 13990924 - 13990831
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| ||||||||||||||| ||| ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  13990924 acttggggagcaaacacaatatggcccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 13990831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 2168723 - 2168811
Alignment:
Q  198 gggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    ||||||||||||||| ||| ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  2168723 gggagcaaacacaatatggcccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 2168811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 13980737 - 13980816
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||| ||| ||||||| |||||||||||||||||||||| ||||  ||||| ||||||||||||||||||||||||||    
T  13980737 cacaatatggcccaataagctaatagtatgacccaataacccaattcctatatagacatccacttataatattcataaca 13980816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 23344468 - 23344375
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| |||||||| |||||| ||| ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  23344468 acttggggagcaagcacaatatggcccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 23344375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 34578792 - 34578892
Alignment:
Q  81 agagaatagagatagaaaaaagaggattatattattctcttgatgta--taattaggttacatatgagctctatttatagagaaatacaatgacttgggg 178  Q
    |||||||||||| |  | ||||| |||||||||||||||||  | |   |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34578792 agagaatagagagattagaaagatgattatattattctcttagtatcactaattaggttacatataagctctatttatagagaaatacaatgacttgggg 34578891  T
Q  179 a 179  Q
    |    
T  34578892 a 34578892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 2174290 - 2174378
Alignment:
Q  198 gggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    ||||||||||||||| ||| ||||||| |||| | ||||| ||||||||| ||||| ||||||||||| ||||| ||||||||||||||    
T  2174290 gggagcaaacacaatatggcccaataagctaacaatatgatccaataacccaattgctatatggacatacacttgtaatattcataaca 2174378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 9721536 - 9721612
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctct--tgatgtataattaggttacatatgagctctatt 153  Q
    |||||||||||||| |||| ||||||||||||||||||||||  ||||||||||||||  |||||||||||| ||||    
T  9721536 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattagagtacatatgagctttatt 9721612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 23338921 - 23338828
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| |||||||| |||||| ||| ||||||| |||| | ||||| ||||||| | ||||| ||||||||||||||||| ||||||||||||||    
T  23338921 acttggggagcaagcacaatatggcccaataagctaacaatatgatccaataatccaattgctatatggacatccacttgtaatattcataaca 23338828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 287
Target Start/End: Original strand, 9730394 - 9730474
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataacaa 287  Q
    |||||| ||| ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||    
T  9730394 cacaatatggcccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataacaa 9730474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 13991988 - 13992059
Alignment:
Q  106 attatattattctcttgat--gtataattaggttacatatgagctctatttatagagaaatacaatgacttg 175  Q
    |||||||||||||||||||  ||||||||||||| ||||||||||||||||||| | ||| |||||||||||    
T  13991988 attatattattctcttgatatgtataattaggttgcatatgagctctatttatacataaacacaatgacttg 13992059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 3110590 - 3110669
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||| ||| ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  3110590 cacaatatggcccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 3110669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 40800719 - 40800798
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||| ||| ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  40800719 cacaatatggcccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 40800798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 286
Target Start/End: Original strand, 9724686 - 9724783
Alignment:
Q  188 caataacttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| |||| |||||||| |||||| ||| |||| || |||| | ||||| ||||||||| ||||| ||||||||||||||||  ||||||||||||||    
T  9724686 caatgacttggggagcaagcacaatatgg-ccaaaaagctaacaatatgatccaataacccaattgctatatggacatccactagtaatattcataaca 9724783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 48216443 - 48216496
Alignment:
Q  233 tatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  48216443 tatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 48216496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 207 - 287
Target Start/End: Original strand, 3112207 - 3112287
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataacaa 287  Q
    |||||| ||| ||||||| |||| | ||||| |  |||||| ||||| ||||||||||||||||| |||||||||||||||    
T  3112207 cacaatatggcccaataagctaacaatatgatcttataacccaattgctatatggacatccacttgtaatattcataacaa 3112287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 40802654 - 40802722
Alignment:
Q  218 ccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    ||||||| |||| | ||||| ||||||||  ||||| ||||||||||||||||| ||||||||||||||    
T  40802654 ccaataagctaacaatatgatccaataactcaattgctatatggacatccacttgtaatattcataaca 40802722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 9724670 - 9724703
Alignment:
Q  150 tatttatagagaaatacaatgacttggggagcaa 183  Q
    ||||||||||||||||||||||||||||||||||    
T  9724670 tatttatagagaaatacaatgacttggggagcaa 9724703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 17033331 - 17033242
Alignment:
Q  81 agagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaat 169  Q
    |||||||||||| |||| || ||||||||||||||||||||   ||||| ||| | ||||||| ||  |||||||||||||||| ||||||    
T  17033331 agagaatagagagagaagaacgaggattatattattctcttataatgtacaat-atgttacatgtggtctctatttatagagaagtacaat 17033242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 21473174 - 21473103
Alignment:
Q  216 gtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataacaa 287  Q
    ||||||||| ||||||||||| |||||||||  | ||| ||| ||||||||||||  ||||||| |||||||    
T  21473174 gtccaataagctaatagtatggcccaataacacatttgctatttggacatccactattaatatttataacaa 21473103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 19307751 - 19307787
Alignment:
Q  135 gttacatatgagctctatttatagagaaatacaatga 171  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  19307751 gttacatgtgatctctatttatagagaaatacaatga 19307787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 350965 - 351071
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctctt--gatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  350965 agagagaatagagagagaagaaagaggattatattattctcttatgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 351064  T
Q  177 ggagcaa 183  Q
    |||||||    
T  351065 ggagcaa 351071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 345644 - 345747
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctctt--gatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| || ||||||||||||||| ||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  345644 agagagaatagagagagaagaatgaggattatattattttcttatgatgtataattaggttacatgtgagctctatttatagagaaatacaatgacttgg 345743  T
Q  177 ggag 180  Q
    ||||    
T  345744 ggag 345747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 345752 - 345831
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||| ||| ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  345752 cacaatatggcccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 345831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 351073 - 351152
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||| ||| ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  351073 cacaatatggaccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 351152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 28366954 - 28367060
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28366954 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 28367053  T
Q  177 ggagcaa 183  Q
    |||||||    
T  28367054 ggagcaa 28367060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 28375694 - 28375800
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28375694 agagagaatagagagagaagaaagaagattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 28375793  T
Q  177 ggagcaa 183  Q
    |||||||    
T  28375794 ggagcaa 28375800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 79 - 286
Target Start/End: Original strand, 30963147 - 30963332
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||  ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||    
T  30963147 agagagaatagagagagaagaaagatgattatattattctcttgtgatgtataattaagtta--tatgagctctatttatagagaaatacaatgacttgg 30963244  T
Q  177 ggagcaaacaccaataacttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataat 276  Q
    ||||||| ||                      |||| ||||||||||| |||| | ||||| ||||||||| ||||||||||||||||||||||||||||    
T  30963245 ggagcaagca----------------------caatatggtccaataagctaacaatatgatccaataacccaattgttatatggacatccacttataat 30963322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 1536543 - 1536634
Alignment:
Q  94 agaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaa 183  Q
    |||| ||||||||||||||||||||||||  || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1536543 agaagaaagaggattatattattctcttggtatctctaattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaa 1536634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 30927356 - 30927460
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||| |||||||||||||| |||  ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||    
T  30927356 agagagaatagagagagaagaaagatgattatattattcttttgtgatgtataattaagtta--tatgagctctatttatagagaaatacaatgacttgg 30927453  T
Q  177 ggagcaa 183  Q
    |||||||    
T  30927454 ggagcaa 30927460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 34647933 - 34648013
Alignment:
Q  105 gattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaa 183  Q
    |||| |||||||||||||  ||||| ||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||    
T  34647933 gattctattattctcttgtgatgtacaattaggttacatatgagctcaatttatacagaaatacaatgatttggggagcaa 34648013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 207 - 287
Target Start/End: Original strand, 1536636 - 1536716
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataacaa 287  Q
    |||||| ||| ||||||| |||| ||||||| ||||||||| ||||| ||||||||||||||||||||||||| |||||||    
T  1536636 cacaatatggcccaataagctaacagtatgatccaataacccaattgctatatggacatccacttataatatttataacaa 1536716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 14663971 - 14664064
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttg 175  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||  || | ||||||||||     |||||||||||||||||||||||||||||||||    
T  14663971 agagagaatagagagagaagaaagaagattatattattctcttggtatctctaattaggtt-----tgagctctatttatagagaaatacaatgacttg 14664064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 28375802 - 28375881
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||| ||| ||||||| |||| | ||||| ||||||||  ||||| ||||||||||||||||| ||||||||||||||    
T  28375802 cacaatatggcccaataagctaacaatatgatccaataactcaattgctatatggacatccacttgtaatattcataaca 28375881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 14664069 - 14664115
Alignment:
Q  240 caataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||    
T  14664069 caataacccaattgctatatggacatccacttataatattcataaca 14664115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 30957704 - 30957757
Alignment:
Q  233 tatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  30957704 tatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 30957757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 24111292 - 24111232
Alignment:
Q  226 ctaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||||||  || |||||||||||||| || |||||| ||||||||||||||||||||||    
T  24111292 ctaatagtacaactcaataacctaattgctaaatggacgtccacttataatattcataaca 24111232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 28367062 - 28367141
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||| ||| ||||||| |||| | ||||| ||||||||  ||||| ||||| ||||||||||| ||||||||||||||    
T  28367062 cacaatatggcccaataagctaacaatatgatccaataactcaattgctatattgacatccacttgtaatattcataaca 28367141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 34648026 - 34648089
Alignment:
Q  226 ctaatagtatgacccaataacctaattgttatatgga----catccacttataatattcataac 285  Q
    |||||||||| ||||||||||| ||||| ||||||||    |||||||||||||||||||||||    
T  34648026 ctaatagtataacccaataacccaattgctatatggacatccatccacttataatattcataac 34648089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 6156737 - 6156631
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6156737 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 6156638  T
Q  177 ggagcaa 183  Q
    |||||||    
T  6156637 ggagcaa 6156631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 6162434 - 6162328
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6162434 agagagaatagagagagaagaaagatgattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 6162335  T
Q  177 ggagcaa 183  Q
    |||||||    
T  6162334 ggagcaa 6162328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 53982280 - 53982180
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||| ||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53982280 agagagaatagatatagaaaaaagaggattatgttattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 53982181  T
Q  177 g 177  Q
    |    
T  53982180 g 53982180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 20192565 - 20192671
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  20192565 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaggttacatataagctctatttatagagaaatacaatgactttg 20192664  T
Q  177 ggagcaa 183  Q
    |||||||    
T  20192665 ggagcaa 20192671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 20197929 - 20198035
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  20197929 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaggttacatataagctctatttatagagaaatacaatgactttg 20198028  T
Q  177 ggagcaa 183  Q
    |||||||    
T  20198029 ggagcaa 20198035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 7156092 - 7156032
Alignment:
Q  227 taatagtatgacccaataacctaatt-gttatatggacatccacttataatattcataaca 286  Q
    |||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||    
T  7156092 taatagtatgacccaataacttaatttgttatatggagatccacttataatattcataaca 7156032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 286
Target Start/End: Complemental strand, 53982182 - 53982094
Alignment:
Q  198 gggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||||| ||||||  || ||||||| |||| ||||||| | ||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  53982182 gggagcaagcacaataaggcccaataagctaacagtatgatcaaataacccaattgctatatggacatccacttgtaatattcataaca 53982094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 20192673 - 20192752
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||| ||| ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  20192673 cacaatatggcccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 20192752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 20198037 - 20198116
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||| ||| |||||||||||| | ||||| ||||||||| ||||| |||||||||||||| || ||||||||||||||    
T  20198037 cacaatatggcccaataaactaacaatatgatccaataacccaattgctatatggacatccatttgtaatattcataaca 20198116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 287
Target Start/End: Complemental strand, 6156643 - 6156549
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataacaa 287  Q
    |||| |||||||| |||||| ||| |||||||||||| | ||||| ||||||||| ||||  |||||| |||| ||||| |||||||||||||||    
T  6156643 acttggggagcaagcacaatatggcccaataaactaacaatatgatccaataacccaatttctatatgaacattcacttgtaatattcataacaa 6156549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 6162340 - 6162247
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| |||||||| |||||| ||  |||||||||||| | ||||| ||||||||| ||||  |||||||| |||||||| ||||||||||||||    
T  6162340 acttggggagcaagcacaatatgacccaataaactaacaatatgatccaataacccaatttctatatggatatccacttgtaatattcataaca 6162247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 7739865 - 7739916
Alignment:
Q  235 tgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||| ||||||    
T  7739865 tgacccaataacccaattgatatatgaacatccacttataatatttataaca 7739916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 12733943 - 12733982
Alignment:
Q  129 aattaggttacatatgagctctatttatagagaaatacaa 168  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  12733943 aattaggttacatgtgagctctatttatagagaaatacaa 12733982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 19582081 - 19582035
Alignment:
Q  240 caataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  19582081 caataacccaattgatatatggacatccacttataaaattcataaca 19582035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 289
Target Start/End: Original strand, 28295355 - 28295389
Alignment:
Q  255 tatatggacatccacttataatattcataacaaat 289  Q
    ||||||||||||| |||||||||||||||||||||    
T  28295355 tatatggacatccgcttataatattcataacaaat 28295389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 12734040 - 12734084
Alignment:
Q  227 taatagtatgacccaataacctaattgttatatggacatccactt 271  Q
    ||||||||||||||||||||  ||||||||| |||||||| ||||    
T  12734040 taatagtatgacccaataactaaattgttatgtggacatcaactt 12734084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 630917 - 630811
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  630917 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 630818  T
Q  177 ggagcaa 183  Q
    |||||||    
T  630817 ggagcaa 630811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 636468 - 636362
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  636468 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 636369  T
Q  177 ggagcaa 183  Q
    |||||||    
T  636368 ggagcaa 636362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 14893416 - 14893310
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14893416 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 14893317  T
Q  177 ggagcaa 183  Q
    |||||||    
T  14893316 ggagcaa 14893310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 22430534 - 22430428
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22430534 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 22430435  T
Q  177 ggagcaa 183  Q
    |||||||    
T  22430434 ggagcaa 22430428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 22436128 - 22436022
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22436128 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 22436029  T
Q  177 ggagcaa 183  Q
    |||||||    
T  22436028 ggagcaa 22436022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 79 - 289
Target Start/End: Complemental strand, 26694339 - 26694149
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    ||||||||||||||||||| ||||| |||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26694339 agagagaatagagatagaagaaagaagattatgttattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 26694240  T
Q  177 ggagcaaacaccaataacttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataat 276  Q
    ||||||| || ||||||                     ||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||||||||| ||||    
T  26694239 ggagcaagca-caataa---------------------ggttcaataaactaacagtatgatccaataacccaattgctatatggacatccacttgtaat 26694162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 7917391 - 7917497
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7917391 agagagaatagagagagaagaaagaagattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 7917490  T
Q  177 ggagcaa 183  Q
    |||||||    
T  7917491 ggagcaa 7917497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 22425164 - 22425058
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22425164 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattgggttacatatgagctctatttatagagaaatacaatgacttgg 22425065  T
Q  177 ggagcaa 183  Q
    |||||||    
T  22425064 ggagcaa 22425058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 26702435 - 26702329
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    ||||||||||||||||||| ||||| |||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26702435 agagagaatagagatagaagaaagaagattatgttattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 26702336  T
Q  177 ggagcaa 183  Q
    |||||||    
T  26702335 ggagcaa 26702329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 43777177 - 43777071
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43777177 agagagaatagagagagaagaaagatgattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 43777078  T
Q  177 ggagcaa 183  Q
    |||||||    
T  43777077 ggagcaa 43777071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 7909936 - 7910042
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||| ||||||||| |||| ||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7909936 agagtgaatagagagagaagaaagatgattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 7910035  T
Q  177 ggagcaa 183  Q
    |||||||    
T  7910036 ggagcaa 7910042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 14898969 - 14898863
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  14898969 agagagaatagagagagaagaaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgatttag 14898870  T
Q  177 ggagcaa 183  Q
    |||||||    
T  14898869 ggagcaa 14898863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 129 - 286
Target Start/End: Original strand, 19052368 - 19052526
Alignment:
Q  129 aattaggttaca-tatgagctctatttatagagaaatacaatgacttggggagcaaacaccaataacttagggagcaaacacaatgtggtccaataaact 227  Q
    |||||||||| | ||||||||||||||||||||||||||||||| ||| ||| |||| | |||| |||| |||||||| |||||| | ||||||||| ||    
T  19052368 aattaggttatagtatgagctctatttatagagaaatacaatgatttgaggaacaaatatcaatgacttggggagcaagcacaatatcgtccaataagct 19052467  T
Q  228 aatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    ||||||||||| |||||||  ||||| |||||||| || |||||||||||| |||||||    
T  19052468 aatagtatgactcaataactcaattgctatatggatattcacttataatatccataaca 19052526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 43771649 - 43771545
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||  ||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  43771649 agagagaatagagagagaagaaagatgattatattattctcttgtgatgtataattaggtta--tatgagctctatttatagagaaatacaatgacttgg 43771552  T
Q  177 ggagcaa 183  Q
    |||||||    
T  43771551 ggagcaa 43771545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 1519332 - 1519238
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatga 171  Q
    |||||||||||||| |||| ||||||||||||||||||||||||  || | ||||||||||||||||||||||||||||||||||||||||||||    
T  1519332 agagagaatagagagagaagaaagaggattatattattctcttggtatctctaattaggttacatatgagctctatttatagagaaatacaatga 1519238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 287
Target Start/End: Complemental strand, 630823 - 630729
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataacaa 287  Q
    |||| |||||||| |||||| ||| ||||||| |||| | ||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  630823 acttggggagcaagcacaatatggcccaataagctaacaatatgatccaataacccaattgttatatggacatccacttgtaatattcataacaa 630729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 1525834 - 1525722
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatt------tatagagaaatacaatg 170  Q
    |||||||||||||| |||| |||||||||||||||||| | |||  || | ||||||||||||||||||||||||||      |||||||||||||||||    
T  1525834 agagagaatagagagagaagaaagaggattatattatttttttggtatctctaattaggttacatatgagctctatttatatttatagagaaatacaatg 1525735  T
Q  171 acttggggagcaa 183  Q
    |||||||||||||    
T  1525734 acttggggagcaa 1525722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 636374 - 636281
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| |||||||| |||||| ||| ||||||| |||| | ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  636374 acttggggagcaagcacaatatggcccaataagctaacaatatgatccaataacccaattgttatatggacatccacttgtaatattcataaca 636281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 14898873 - 14898782
Alignment:
Q  195 ttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    ||||||||||| |||||| ||||||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||| | ||||||||||||||    
T  14898873 ttagggagcaagcacaatatggtccaataagctaacaatatgatccaataacccaattgctatatggacatccacctgtaatattcataaca 14898782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 22430440 - 22430347
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| |||||||| |||||| ||| ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  22430440 acttggggagcaagcacaatatggcccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 22430347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 22436034 - 22435941
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| |||||||| |||||| ||| ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  22436034 acttggggagcaagcacaatatggcccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 22435941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 43777083 - 43776990
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| |||||||| |||||| ||| ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  43777083 acttggggagcaagcacaatatggcccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 43776990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 7910044 - 7910123
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||| ||| ||||||| |||| | ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  7910044 cacaatatggcccaataagctaacaatatgatccaataacccaattgttatatggacatccacttgtaatattcataaca 7910123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 7917499 - 7917578
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||| ||| ||||||| |||| | ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  7917499 cacaatatggcccaataagctaacaatatgatccaataacccaattgttatatggacatccacttgtaatattcataaca 7917578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 288
Target Start/End: Complemental strand, 22425070 - 22424975
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataacaaa 288  Q
    |||| |||||||| |||||| ||| ||||||| |||| | ||||| ||||||||| | ||| ||||||||||||||||| ||||||||||||||||    
T  22425070 acttggggagcaagcacaatatggcccaataagctaacaatatgatccaataacccatttgctatatggacatccacttgtaatattcataacaaa 22424975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 188 - 286
Target Start/End: Complemental strand, 1525739 - 1525641
Alignment:
Q  188 caataacttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| |||| |||||||| |||||| ||  | ||||| |||| ||||||| ||||||||| ||||  ||||||||||||||||||||||||||||||||    
T  1525739 caatgacttggggagcaagcacaatatgacctaataagctaacagtatgatccaataacccaatttctatatggacatccacttataatattcataaca 1525641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 43771557 - 43771464
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| |||||||| |||||| ||| ||||||| |||| | ||||| | ||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  43771557 acttggggagcaagcacaatatggcccaataagctaacaatatgatctaataacccaattgctatatggacatccacttgtaatattcataaca 43771464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 289
Target Start/End: Complemental strand, 1519234 - 1519138
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataacaaat 289  Q
    |||| |||||||| |||||| ||  ||||||| |||| | ||| | ||||||| | ||||| |||||||| ||||||||||||||||||||||||||    
T  1519234 acttggggagcaagcacaatatgacccaataagctaacaatataatccaataatccaattgctatatggatatccacttataatattcataacaaat 1519138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 14893293 - 14893225
Alignment:
Q  218 ccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  14893293 ccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 14893225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 11147112 - 11147064
Alignment:
Q  226 ctaatagtatgacccaataacctaattgttatatggacatccacttata 274  Q
    |||||| |||||| || ||||| ||||||||||||||||||| ||||||    
T  11147112 ctaatattatgactcattaacccaattgttatatggacatccgcttata 11147064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 286
Target Start/End: Complemental strand, 44472816 - 44472788
Alignment:
Q  258 atggacatccacttataatattcataaca 286  Q
    |||||||||||||||||||||||||||||    
T  44472816 atggacatccacttataatattcataaca 44472788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 76 - 177
Target Start/End: Complemental strand, 26680759 - 26680656
Alignment:
Q  76 agcagagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgact 173  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26680759 agcagagagaatagagatagaagaaagaggattatgttattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgact 26680660  T
Q  174 tggg 177  Q
    ||||    
T  26680659 tggg 26680656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 14856121 - 14856017
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    ||||||||||||||  ||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14856121 agagagaatagaga--gaagaaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacgtgg 14856024  T
Q  177 ggagcaa 183  Q
    |||||||    
T  14856023 ggagcaa 14856017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 14847265 - 14847159
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  14847265 agagagaatagagagagaagaaagaagattatattattctcttgtgatgtataattaggttacatatgagttctatttatagagaaatacaatgacgtgg 14847166  T
Q  177 ggagcaa 183  Q
    |||||||    
T  14847165 ggagcaa 14847159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 6933126 - 6933039
Alignment:
Q  199 ggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||||||||||| | ||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  6933126 ggagcaaacacaatatagtccaataagctaacagtatgacccaataacccaattgctatatggacatccacttataatattcataaca 6933039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 286
Target Start/End: Original strand, 10345722 - 10345903
Alignment:
Q  105 gattatattattctcttgatgtat-aattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaaacaccaataacttagggagc 203  Q
    ||||||||||||||||||   | | ||||| ||||||| ||| ||||||||||| ||||||| ||||||||| |||  |||||| ||| |||| || | |    
T  10345722 gattatattattctcttgtgttgtcaattaagttacatgtgaactctatttatatagaaatagaatgacttgaggaaaaaacacaaatgacttgggaaac 10345821  T
Q  204 aaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    || ||||||   || || | ||||||| ||||||  ||||||| ||||||||||||| |||||||||| ||||||||||||||    
T  10345822 aagcacaatagcgtgca-tgaactaatggtatgatgcaataacttaattgttatatgaacatccacttgtaatattcataaca 10345903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 286
Target Start/End: Complemental strand, 14856024 - 14855936
Alignment:
Q  198 gggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||||| |||||| ||| ||||||  |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  14856024 gggagcaagcacaatatggcccaatatgctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataaca 14855936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 6924903 - 6924846
Alignment:
Q  232 gtatgacccaataacctaattgttatatggacatccacttataatattcataacaaat 289  Q
    |||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||||    
T  6924903 gtatgatccaataacccaattgctatatcgacatccacttataatattcataacaaat 6924846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 14847166 - 14847077
Alignment:
Q  198 gggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataacaa 287  Q
    |||||||| |||||| ||| ||||||| |||| | ||||| | ||||||| ||||| |||||||| |||||||| |||||||||||||||    
T  14847166 gggagcaatcacaatatggcccaataagctaacaatatgatcaaataacccaattgctatatggatatccacttgtaatattcataacaa 14847077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 286
Target Start/End: Complemental strand, 26680658 - 26680570
Alignment:
Q  198 gggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||||| ||||||  || |||||||||||| ||||||| | || |||  ||||| || |||||||||||||| ||||||||||||||    
T  26680658 gggagcaagcacaataaggcccaataaactaacagtatgatcaaaaaactcaattgctacatggacatccacttgtaatattcataaca 26680570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 12756135 - 12756241
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12756135 agagagaatagagagagaagaaagatgattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 12756234  T
Q  177 ggagcaa 183  Q
    |||||||    
T  12756235 ggagcaa 12756241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 24052007 - 24052113
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24052007 agagagaatagagagagaagaaagaagattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 24052106  T
Q  177 ggagcaa 183  Q
    |||||||    
T  24052107 ggagcaa 24052113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 41043668 - 41043562
Alignment:
Q  76 agcagagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgact 173  Q
    |||| ||||||||||||||||| ||||||||||||  ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41043668 agcatagagaatagagatagaagaaagaggattatgctattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgact 41043569  T
Q  174 tggggag 180  Q
    |||||||    
T  41043568 tggggag 41043562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 41049036 - 41048929
Alignment:
Q  81 agagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgggg 178  Q
    ||||||||||||||||| ||||| |||||| ||||| |||||  ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  41049036 agagaatagagatagaagaaagaagattatgttattatcttgtgatgtataattaggttacatatgagctctatttataaataaatacaatgacttgggg 41048937  T
Q  179 agcaaaca 186  Q
    ||||||||    
T  41048936 agcaaaca 41048929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 12756243 - 12756322
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||| ||| ||||||| |||| | ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  12756243 cacaatatggcccaataagctaacaatatgatccaataacccaattgttatatggacatccacttgtaatattcataaca 12756322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 24052115 - 24052194
Alignment:
Q  207 cacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||||| ||| |||||||||||| | ||||| ||||||||  |||||||||||||||||||| || ||||||||||||||    
T  24052115 cacaatatggcccaataaactaacaatatgatccaataactcaattgttatatggacatccatttgtaatattcataaca 24052194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 41043546 - 41043475
Alignment:
Q  218 ccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataacaaat 289  Q
    ||||||| |||| | ||||| ||||||||| ||||| ||||| ||||||||||| |||||||||||||||||    
T  41043546 ccaataagctaacaatatgatccaataacccaattgctatatagacatccacttgtaatattcataacaaat 41043475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 2232200 - 2232107
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttgatgtata-attaggttacatatgagctctatttatagagaaatacaatga 171  Q
    |||||||||||||| |||| |||||||||||||||||| |||||  || || | || ||||||||||| || ||||||||||||| || |||||    
T  2232200 agagagaatagagagagaagaaagaggattatattattatcttgtggtgtacaatatgttacatatgatctatatttatagagaagtataatga 2232107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 165
Target Start/End: Original strand, 24042894 - 24042924
Alignment:
Q  135 gttacatatgagctctatttatagagaaata 165  Q
    |||||||||||||||||||||||||||||||    
T  24042894 gttacatatgagctctatttatagagaaata 24042924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 41048895 - 41048858
Alignment:
Q  249 aattgttatatggacatccacttataatattcataaca 286  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  41048895 aattgctatatggacatccacttgtaatattcataaca 41048858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 27090 - 26984
Alignment:
Q  79 agagagaatagagatagaaaaaagaggattatattattctcttg--atgtataattaggttacatatgagctctatttatagagaaatacaatgacttgg 176  Q
    |||||||||| ||| |||| |||||||||||||||||||||||   |||| | |||| ||||||||||||||||||||||||||||||||||||||||||    
T  27090 agagagaatatagagagaagaaagaggattatattattctctttttatgttttattatgttacatatgagctctatttatagagaaatacaatgacttgg 26991  T
Q  177 ggagcaa 183  Q
    |||||||    
T  26990 ggagcaa 26984  T

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Target: scaffold0211; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 288
Target Start/End: Complemental strand, 26996 - 26901
Alignment:
Q  193 acttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataacaaa 288  Q
    |||| |||||||| |||||| ||  ||||||| |||| | ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||||    
T  26996 acttggggagcaagcacaatatgacccaataagctaacaatatgatccaataacccaattgctatatggacatccacttgtaatattcataacaaa 26901  T

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Target: scaffold0169 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 11135 - 11038
Alignment:
Q  88 agagatagaaaaaagaggattatattattctcttgatgtat--aattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaa 183  Q
    ||||| |||| ||||| |||||||||||||||||| | |||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11135 agagagagaagaaagatgattatattattctcttggtatatccaattaggttatatatgagctctatttatagagaaatacaatgacttggggagcaa 11038  T

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Target: scaffold0169; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 188 - 286
Target Start/End: Complemental strand, 8793 - 8695
Alignment:
Q  188 caataacttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatatggacatccacttataatattcataaca 286  Q
    |||| |||| |||||||| |||||| ||  ||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  8793 caatgacttggggagcaagcacaatatgacccaataagctaatagtatgacccaataacccaattgctatatagacatccacttataatattcataaca 8695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 8853 - 8776
Alignment:
Q  108 tatattattctcttgatgtat--aattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaa 183  Q
    ||||||||||||||| |||||  |||||| |||||||| | |||||||||||||||||||||||||||||||||||||    
T  8853 tatattattctcttggtgtatccaattagattacatataatctctatttatagagaaatacaatgacttggggagcaa 8776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 11055 - 10984
Alignment:
Q  188 caataacttagggagcaaacacaatgtggtccaataaactaatagtatgacccaataacctaattgttatat 259  Q
    |||| |||| |||||||| |||||| ||  ||||||| |||||||||||||||||||||| ||||| |||||    
T  11055 caatgacttggggagcaagcacaatatgacccaataagctaatagtatgacccaataacccaattgctatat 10984  T

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Target: scaffold1317 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1317
Description:

Target: scaffold1317; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 2009 - 2055
Alignment:
Q  76 agcagagagaatagagatagaaaaaagaggattatattattctcttg 122  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  2009 agcagagagaatagagatagaagaaagaggaatatattattctcttg 2055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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