View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0696_high_10 (Length: 251)
Name: NF0696_high_10
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0696_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 9643090 - 9642849
Alignment:
| Q |
1 |
atccaattttcagtgaagattttaggactttttggattgttaggttgaaaattgtgacaataatatccattgcaagtattgatgataggttgaggagcat |
100 |
Q |
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| T |
9643090 |
atccaattttcagtgaaaattttaggactttttggattgttaggttgaaaattgtgacaataatatccattgcaagtattgatgataggttgaggagcat |
9642991 |
T |
|
| Q |
101 |
cttgttgttgacacatgatccatggaacaccaatgttttgtgatagagccatttgagcagcccattgaacatatgccttcccagcatctttgtaattcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9642990 |
cttgttgttgacacatgatccatggaacaccaatgttttgtgctagagccatctgagcagcccattgaacatatgccttcccagcatctttgtaattcca |
9642891 |
T |
|
| Q |
201 |
catgatgtccccatattcattctcaatttgagctagaataat |
242 |
Q |
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| T |
9642890 |
catgatgtccccatattcattctcaatttgagctagaataat |
9642849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 10545036 - 10544795
Alignment:
| Q |
1 |
atccaattttcagtgaagattttaggactttttggattgttaggttgaaaattgtgacaataatatccattgcaagtattgatgataggttgaggagcat |
100 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||| || ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10545036 |
atccaattttcagtgaacatttttggactttttgggttattaggtttaaaattgtgacaataatacccattgcaagtattgatgataggttgaggagcat |
10544937 |
T |
|
| Q |
101 |
cttgttgttgacacatgatccatggaacaccaatgttttgtgatagagccatttgagcagcccattgaacatatgccttcccagcatctttgtaattcca |
200 |
Q |
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| | |||||||||||||| |||||||||||| || ||||||| || |||||||||||||||||||| || |||||| ||||| | |||||| ||||||| |
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| T |
10544936 |
cattttgttgacacatgaaccatggaacaccgatattttgtgctaaagccatttgagcagcccatttaatatatgctttccctggttctttgaaattcca |
10544837 |
T |
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| Q |
201 |
catgatgtccccatattcattctcaatttgagctagaataat |
242 |
Q |
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|||||| || |||||||||||||||||||||||||||||||| |
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| T |
10544836 |
catgatatctccatattcattctcaatttgagctagaataat |
10544795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 18584494 - 18584445
Alignment:
| Q |
88 |
ggttgaggagcatcttgttgttgacacatgatccatggaacaccaatgtt |
137 |
Q |
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|||||||||||||| ||||||| |||||||||||||| || |||||||| |
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| T |
18584494 |
ggttgaggagcatcaggttgttggcacatgatccatgggactccaatgtt |
18584445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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