View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0696_high_12 (Length: 219)
Name: NF0696_high_12
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0696_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 39296961 - 39296843
Alignment:
| Q |
1 |
tctcatttccaaagttcagttcaatatctttagccacccaaatcaaatacacatcagccttacttttctgcaagagatatgataggaacacacaaattcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296961 |
tctcatttccaaagttcagttcaatatctttagccacccaaatcaaatacacatcagccttacttttctgcaagagatatgataggaacacacaaattcc |
39296862 |
T |
|
| Q |
101 |
agaacctgttgctactaaa |
119 |
Q |
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||||||||||||||||||| |
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| T |
39296861 |
agaacctgttgctactaaa |
39296843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 39290081 - 39289963
Alignment:
| Q |
1 |
tctcatttccaaagttcagttcaatatctttagccacccaaatcaaatacacatcagccttacttttctgcaagagatatgataggaacacacaaattcc |
100 |
Q |
| |
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|||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||| |||||||||||| || |
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| T |
39290081 |
tctcttttccaaagttcatttcaatatctttagccacccaaatcaagcacacatcagccttatttttctgcaacagaaatgataagaacacacaaatccc |
39289982 |
T |
|
| Q |
101 |
agaacctgttgctactaaa |
119 |
Q |
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||||||||||||||||||| |
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| T |
39289981 |
agaacctgttgctactaaa |
39289963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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