View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0696_high_2 (Length: 433)

Name: NF0696_high_2
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0696_high_2
NF0696_high_2
[»] chr6 (2 HSPs)
chr6 (28-241)||(387013-387243)
chr6 (238-340)||(386879-386985)
[»] chr2 (3 HSPs)
chr2 (283-359)||(4091448-4091524)
chr2 (369-420)||(32382964-32383015)
chr2 (312-364)||(190234-190286)
[»] chr5 (7 HSPs)
chr5 (75-126)||(29821033-29821084)
chr5 (142-206)||(29597269-29597334)
chr5 (140-185)||(29820924-29820969)
chr5 (78-136)||(29594038-29594096)
chr5 (140-185)||(29642652-29642697)
chr5 (78-142)||(29597383-29597447)
chr5 (78-142)||(29642540-29642604)
[»] scaffold0100 (1 HSPs)
scaffold0100 (276-369)||(41996-42088)
[»] chr7 (3 HSPs)
chr7 (283-366)||(48693187-48693270)
chr7 (283-363)||(31251819-31251900)
chr7 (140-184)||(19325706-19325750)
[»] chr8 (2 HSPs)
chr8 (321-367)||(32049122-32049168)
chr8 (273-366)||(38276325-38276419)
[»] chr4 (1 HSPs)
chr4 (284-364)||(16645964-16646042)
[»] chr3 (2 HSPs)
chr3 (369-404)||(2240703-2240738)
chr3 (283-359)||(39400043-39400119)
[»] chr1 (1 HSPs)
chr1 (283-363)||(5953287-5953367)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 28 - 241
Target Start/End: Complemental strand, 387243 - 387013
Alignment:
Q  28 agaaaacaagaaatgaataaattagttacttgttagggtgttcacctagtaattctctataatttgaaaaataatagagtaaagcaatctattggtaatg 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  387243 agaaaacaagaaatgaataaattagttacttgttagggtgttcacctagtaattctctataatttgaaaaataatagactaaagcaatctattggtaatg 387144  T
Q  128 caataatgttgtgtttctttacaacgatttacttgttcgaatttgtttgaattcatgtc-----------------atttcatagtaaaagattgcaata 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||                 ||||||||||||||||||||||||    
T  387143 caataatgttgtgtttctttacaacgatttacttgttcgaatttgcttgaattcatgtcattttgaaatccatgtcatttcatagtaaaagattgcaata 387044  T
Q  211 aattcgtttaggcacacatttcccgtcacat 241  Q
    ||||||||||||||| ||||||| |||||||    
T  387043 aattcgtttaggcacgcatttccagtcacat 387013  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 238 - 340
Target Start/End: Complemental strand, 386985 - 386879
Alignment:
Q  238 acatgcgtatttttgcatatcactctcctgtat----gtattgctctccccctttcaaaattgttcattctcttaaaaatgtccagtgtgagttaactca 333  Q
    ||||||||||||  || ||||||||||||||||    ||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  386985 acatgcgtatttcggcgtatcactctcctgtataagagtattgctctctccctttcaaaattgttcactctcttaaaaatgcccagtgtgagttaactca 386886  T
Q  334 tgctcgg 340  Q
    |||||||    
T  386885 tgctcgg 386879  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 359
Target Start/End: Complemental strand, 4091524 - 4091448
Alignment:
Q  283 ccctttcaaaattgttcattctcttaaaaatgtccagtgtgagttaactcatgctcggctttttcaacatgagttaa 359  Q
    |||||| |||||||||||||| ||||||||||| |  ||||||||||||||| |||| |||||||||| ||||||||    
T  4091524 cccttttaaaattgttcattcccttaaaaatgttcgatgtgagttaactcatactcgactttttcaacgtgagttaa 4091448  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 32383015 - 32382964
Alignment:
Q  369 ggccacgaatctgctggtgtgggatacctgacatataacttattggcaacag 420  Q
    |||||| |||||||||||||||||||||||||||||  |||||||| |||||    
T  32383015 ggccacaaatctgctggtgtgggatacctgacatattgcttattggtaacag 32382964  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 190286 - 190234
Alignment:
Q  312 atgtccagtgtgagttaactcatgctcggctttttcaacatgagttaactcac 364  Q
    |||||||  ||||||||||||| | |||||||||||||  |||||||||||||    
T  190286 atgtccatggtgagttaactcacgttcggctttttcaatgtgagttaactcac 190234  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 29821084 - 29821033
Alignment:
Q  75 agtaattctctataatttgaaaaataatagagtaaagcaatctattggtaat 126  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  29821084 agtaattctctatgatttgaaaaataatagagtaaagcaagctattggtaat 29821033  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 29597334 - 29597269
Alignment:
Q  142 ttctttacaacgatttacttgttcgaatttgtttgaattc-atgtcatttcatagtaaaagattgc 206  Q
    ||||||| || ||||||||||||||||||| |||||| || |||||||||||||||||||||||||    
T  29597334 ttctttagaatgatttacttgttcgaatttatttgaaatccatgtcatttcatagtaaaagattgc 29597269  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 29820969 - 29820924
Alignment:
Q  140 gtttctttacaacgatttacttgttcgaatttgtttgaattcatgt 185  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||    
T  29820969 gtttctttacaatgatttacttgttcgaatttatttgaattcatgt 29820924  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 29594096 - 29594038
Alignment:
Q  78 aattctctataatttgaaaaataatagagtaaagcaatctattggtaatgcaataatgt 136  Q
    |||||| |||||||||||||  ||||||||||||||| || |||||| |||||||||||    
T  29594096 aattctttataatttgaaaacgaatagagtaaagcaagcttttggtagtgcaataatgt 29594038  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 29642652 - 29642697
Alignment:
Q  140 gtttctttacaacgatttacttgttcgaatttgtttgaattcatgt 185  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||||    
T  29642652 gtttctttacaatgatttacttgttcaaatttatttgaattcatgt 29642697  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 29597447 - 29597383
Alignment:
Q  78 aattctctataatttgaaaaataatagagtaaagcaatctattggtaatgcaataatgttgtgtt 142  Q
    |||||| |||||||||||||  |||||||||||| || ||||||||| |||||||| || |||||    
T  29597447 aattctttataatttgaaaacaaatagagtaaagaaagctattggtagtgcaataacgtggtgtt 29597383  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 29642540 - 29642604
Alignment:
Q  78 aattctctataatttgaaaaataatagagtaaagcaatctattggtaatgcaataatgttgtgtt 142  Q
    |||||| |||||||||||||  |||||||||||| || ||||||||| |||||||| || |||||    
T  29642540 aattctttataatttgaaaacaaatagagtaaagaaagctattggtagtgcaataacgtggtgtt 29642604  T

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Target: scaffold0100 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 369
Target Start/End: Complemental strand, 42088 - 41996
Alignment:
Q  276 gctctccccctttcaaaattgttcattctcttaaaaatgtccagtgtgagttaactcatgctcggc-tttttcaacatgagttaactcacgctag 369  Q
    |||||| |||||||||||||| ||||||||||||||||  |||  |||| ||||||||  |||||| ||||||||| ||| ||||||||||||||    
T  42088 gctctctccctttcaaaattgctcattctcttaaaaatacccaacgtgaattaactca--ctcggcttttttcaacttgaattaactcacgctag 41996  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 366
Target Start/End: Complemental strand, 48693270 - 48693187
Alignment:
Q  283 ccctttcaaaattgttcattctcttaaaaatgtccagtgtgagttaactcatgctcggctttttcaacatgagttaactcacgc 366  Q
    |||||| ||||||  |||||| |||||  |||||||| ||||||||||||| ||| || ||||||||| |||||||||||||||    
T  48693270 cccttttaaaattactcattcccttaattatgtccagcgtgagttaactcacgcttggttttttcaacgtgagttaactcacgc 48693187  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 363
Target Start/End: Complemental strand, 31251900 - 31251819
Alignment:
Q  283 ccctttcaaaattgttcattctcttaaaaatgtccagtgtgagttaactcatgctcggc-tttttcaacatgagttaactca 363  Q
    ||||||| ||||||||||||  || ||||||||| |   |||||||||||| ||||| | ||||||||| ||||||||||||    
T  31251900 ccctttctaaattgttcatttcctgaaaaatgtctaacatgagttaactcacgctcgacttttttcaacgtgagttaactca 31251819  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 19325750 - 19325706
Alignment:
Q  140 gtttctttacaacgatttacttgttcgaatttgtttgaattcatg 184  Q
    |||||||||  | ||||||||||||| ||||||||||||||||||    
T  19325750 gtttctttatgatgatttacttgttccaatttgtttgaattcatg 19325706  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 367
Target Start/End: Complemental strand, 32049168 - 32049122
Alignment:
Q  321 gtgagttaactcatgctcggctttttcaacatgagttaactcacgct 367  Q
    ||||||||||||||||| |||||||||||| |||||||||| |||||    
T  32049168 gtgagttaactcatgcttggctttttcaacgtgagttaacttacgct 32049122  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 366
Target Start/End: Original strand, 38276325 - 38276419
Alignment:
Q  273 attgctctcc-ccctttcaaaattgttcattctcttaaaaatgtccagtgtgagttaactcatgctcggctttttcaacatgagttaactcacgc 366  Q
    |||||||||| |||||| ||||||| |||||| |||||  ||||||    |||||||||||| ||||||  |||||||| |||||||||||||||    
T  38276325 attgctctcctcccttttaaaattgctcattcccttaattatgtcctacatgagttaactcacgctcggtcttttcaacgtgagttaactcacgc 38276419  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 16646042 - 16645964
Alignment:
Q  284 cctttcaaaattgttcattctcttaaaaatgtccagtgtgagttaactcatgctcggctttttcaacatgagttaactcac 364  Q
    |||||||||||||||||||| |||||  |||||  |||||| |||||||  ||||  |||||||||| |||||||||||||    
T  16646042 cctttcaaaattgttcattcccttaattatgtc--gtgtgaattaactctcgctcaactttttcaacgtgagttaactcac 16645964  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 2240738 - 2240703
Alignment:
Q  369 ggccacgaatctgctggtgtgggatacctgacatat 404  Q
    |||||| |||||||||||||||||||||||||||||    
T  2240738 ggccacaaatctgctggtgtgggatacctgacatat 2240703  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 359
Target Start/End: Original strand, 39400043 - 39400119
Alignment:
Q  283 ccctttcaaaattgttcattctcttaaaaatgtccagtgtgagttaactcatgctcggctttttcaacatgagttaa 359  Q
    |||||| |||||||||| ||| ||||||||| | |  || ||||||||| | |||  ||||||||||||||||||||    
T  39400043 cccttttaaaattgttcgttcacttaaaaatattctctgcgagttaacttacgcttagctttttcaacatgagttaa 39400119  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 363
Target Start/End: Original strand, 5953287 - 5953367
Alignment:
Q  283 ccctttcaaaattgttcattctcttaaaaatgtccagtgtgagttaactcatgctcggctttttcaacatgagttaactca 363  Q
    ||||||||||||||  ||||| ||||   ||||| |  || |||||||||| ||||||| |||||||| ||||||||||||    
T  5953287 ccctttcaaaattgagcattcccttatttatgtctaacgttagttaactcaggctcggccttttcaacttgagttaactca 5953367  T

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