View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0696_low_13 (Length: 385)
Name: NF0696_low_13
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0696_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 30 - 377
Target Start/End: Complemental strand, 30935769 - 30935426
Alignment:
| Q |
30 |
gtatcttatatgaacagaagtgaagacttttaaaaacgattgaactcaaattgtaaatgagttccagttaagaacgaatagtttgagagctgaattcgaa |
129 |
Q |
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| T |
30935769 |
gtatcttatatgaacagaagtgaagacttttaaaaacgattgaactcaaattgtaaacgagttccagttaagaacgaatagtttgagagctgaattcgaa |
30935670 |
T |
|
| Q |
130 |
ttcaggttaattaaattaatctttagttagactttacttaactcctaattgaactctgaattaccaagacatcattctcttggaaacaatagtttaagac |
229 |
Q |
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| T |
30935669 |
ttctgg----ttaaattaatctttagttagactttacttaactcctaatcgaactctgaattaccaagacatcattctcttggaaacaatagtttaagac |
30935574 |
T |
|
| Q |
230 |
aatnnnnnnngacttgataaaactcaagtaaacatacatagaaatattgaaattctaatcagccnnnnnnnccttcaactctgcatcacagaggacttgc |
329 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30935573 |
aataaaaaaagacttgataaaactcaagtaaacatacatagaaatattgaaattctaatcagcctttttttccttcaactctgcatcacagaggacttgc |
30935474 |
T |
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| Q |
330 |
aatgaccctatgaagttgcggcaatggggtgggatctctgtctgtgct |
377 |
Q |
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| T |
30935473 |
aatgaccctatgaagttgcggcaatggggtgggatctctgtatgtgct |
30935426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 30966220 - 30966039
Alignment:
| Q |
30 |
gtatcttatatgaacagaagtgaagacttttaaaaac-------gattgaactcaaattgtaaatgagttccagttaagaacgaatagtttgagagctga |
122 |
Q |
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| T |
30966220 |
gtatcttatttgaacagaagtaaagacttttaaaaacataaagtgattgagctcaaattgttaattagttccagttaa-aatgaattgtttgagagtttt |
30966122 |
T |
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| Q |
123 |
a-ttcgaattcaggttaattaaattaatctttagttagactttacttaactcctaattgaactctgaattaccaagacatcattctc |
208 |
Q |
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| T |
30966121 |
agttcgatttctggttaa----attaatcactggttagactttaattaactcctcatcgaactctgaattaccaagacatcattctc |
30966039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 246 - 377
Target Start/End: Complemental strand, 30965668 - 30965539
Alignment:
| Q |
246 |
ataaaactcaagtaaacatacatagaaatattgaaattctaatcagccnnnnnnnccttcaactctgcatcacagaggacttgcaatgaccctatgaagt |
345 |
Q |
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||||||| |||||||||||||||||||| |||| |||||||||||||| |||||||||| || |||||||| |||||||||||||||| || |
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| T |
30965668 |
ataaaacacaagtaaacatacatagaaaaattggaattctaatcagccttttttt--gtcaactctgcttcgcagaggacgtgcaatgaccctatgaggt |
30965571 |
T |
|
| Q |
346 |
tgcggcaatggggtgggatctctgtctgtgct |
377 |
Q |
| |
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|| || |||| |||| ||||||| | |||||| |
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| T |
30965570 |
tggggaaatgaggtgagatctctctatgtgct |
30965539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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