View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0696_low_14 (Length: 357)
Name: NF0696_low_14
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0696_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 35 - 333
Target Start/End: Complemental strand, 1045721 - 1045446
Alignment:
| Q |
35 |
cagaatgtttgccaaaaataacaaataacaagataaattgaaaaaattaggagcacaaaacgtgattacaatgagttatttattatacttgttaatcgaa |
134 |
Q |
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| T |
1045721 |
cagaatgtttgccaaaaataacagataacaagataaattgaaaaaattaggagcacaa-------------tgagttatttattatacttgttaatcgaa |
1045635 |
T |
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| Q |
135 |
tagattcaaacagtgaagaaaagatcgtaccgtatagtgagagggtttcgttataattgaattgttttcgcgaagggtagaagcttcgatgatgcactta |
234 |
Q |
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| T |
1045634 |
tagattcaaacagtgaagaaaagatcgtaccttatagtgagagggtgtcgttataattgaattgttttcgccatgggtagaagcttcgatg--------- |
1045544 |
T |
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| Q |
235 |
tgcagaacctaaaatgaaactgagaagacgatgaatactactatcgatctaaaaatatgatttttcttgtgaaataagttttttagttagattttgatg |
333 |
Q |
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| T |
1045543 |
-gtataaccgaaaatgaaactgagaagacgatgaatactactatcgatctaaaaatatgatttttcttgtgaaataagttttttagttagattttgatg |
1045446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 1039345 - 1039303
Alignment:
| Q |
134 |
atagattcaaacagtgaagaaaagatcgtaccgtatagtgaga |
176 |
Q |
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| T |
1039345 |
atagattcaaacagtgaagaaaagaacgtaccgtatcgtgaga |
1039303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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