View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0696_low_15 (Length: 347)
Name: NF0696_low_15
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0696_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 96 - 336
Target Start/End: Complemental strand, 11811903 - 11811663
Alignment:
| Q |
96 |
aaattcaaactcaactacaaaagtaatactcactcaaaacagttcatcttatacacctcttttacaatcttccataagaaacaacagattcttagaaagt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11811903 |
aaattcaaactcaactacaaaagtaatactcactcaaaacagttcatcttatacacctcttttacaatcttccataagaaacaacagattcttagaaagt |
11811804 |
T |
|
| Q |
196 |
tcagtaccaaaacctaaccttattgttattccaaatgatctattccaaatccaaaaaacaataatttgttcnnnnnnncaaggcctagaaataagagtta |
295 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11811803 |
tcagttccaaaaccttaccttattgttattccaaatgatctattccaaatccaaaaaacaataatttgttcaaaaaaacaaggcctagaaataagagtta |
11811704 |
T |
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| Q |
296 |
ggagtggtggacatgactatgaaggtctttcttatgtctct |
336 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
11811703 |
ggagtggtggacatgactatgaaggtctttcttatgtctct |
11811663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 96 - 336
Target Start/End: Complemental strand, 11804159 - 11803919
Alignment:
| Q |
96 |
aaattcaaactcaactacaaaagtaatactcactcaaaacagttcatcttatacacctcttttacaatcttccataagaaacaacagattcttagaaagt |
195 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| || ||||||||| | ||||||||||||| | |
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| T |
11804159 |
aaattcaaactcaactacaaaagtaataatcactcaaaacagttcatcttatgcaccccttttacaatcatcaataagaaaccaaagattcttagaaaat |
11804060 |
T |
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| Q |
196 |
tcagtaccaaaacctaaccttattgttattccaaatgatctattccaaatccaaaaaacaataatttgttcnnnnnnncaaggcctagaaataagagtta |
295 |
Q |
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|| || |||||||||||||| |||||| |||||||||| ||||| |||||||||| ||||||||||||||| |||||||| ||||||||| ||| |
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| T |
11804059 |
tcggttccaaaacctaacctcattgtttttccaaatgacctatttcaaatccaaacaacaataatttgttcaaaaaaacaaggcctggaaataagaatta |
11803960 |
T |
|
| Q |
296 |
ggagtggtggacatgactatgaaggtctttcttatgtctct |
336 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
11803959 |
ggagtggtggacatgactatgaaggtctttcttatgtctct |
11803919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 335
Target Start/End: Original strand, 11917327 - 11917369
Alignment:
| Q |
293 |
ttaggagtggtggacatgactatgaaggtctttcttatgtctc |
335 |
Q |
| |
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|||| ||||| |||||||||||||||||| ||||||||||||| |
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| T |
11917327 |
ttagaagtggaggacatgactatgaaggtgtttcttatgtctc |
11917369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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