View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0696_low_16 (Length: 325)
Name: NF0696_low_16
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0696_low_16 |
 | |
|
| [»] chr8 (13 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 6 - 325
Target Start/End: Complemental strand, 32913700 - 32913381
Alignment:
| Q |
6 |
ctccaacaatatgaatcttggaaataatggatctcctactgagtcttgggcttttcaggagttgcagttttctttggtgcatctttagcagcattagctt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32913700 |
ctccaacaatatgaatcttggaaataatggatctcctactgagtcttgggcttttcaggagttgcagttttctttggtgcatctttagcagcattagctt |
32913601 |
T |
|
| Q |
106 |
tatctccagctgcatccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaacattggtcttatctccaactgc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32913600 |
tatctccagctgcatccgaggccttgggcttttctttcttggcttccccagatgcaccactttctttatctttagcaacattggtcttatctccaactcc |
32913501 |
T |
|
| Q |
206 |
acccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaacattggtcttatctccaactgcacccgaggccttg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32913500 |
acccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaacattggtcttatctccaactgcacccgaggccttg |
32913401 |
T |
|
| Q |
306 |
ggcttttctttcttggcttc |
325 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
32913400 |
ggcttttctttcttggcttc |
32913381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 86 - 325
Target Start/End: Complemental strand, 32913446 - 32913207
Alignment:
| Q |
86 |
atctttagcagcattagctttatctccagctgcatccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaaca |
185 |
Q |
| |
|
|||||||||| |||| | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32913446 |
atctttagcaacattggtcttatctccaactgcacccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaaca |
32913347 |
T |
|
| Q |
186 |
ttggtcttatctccaactgcacccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaacattggtcttatctc |
285 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32913346 |
ttggtcttttctccaactgcacccaaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaacattggtcttatctc |
32913247 |
T |
|
| Q |
286 |
caactgcacccgaggccttgggcttttctttcttggcttc |
325 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32913246 |
caactgcacccgaggccttggacttttctttcttggcttc |
32913207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 86 - 325
Target Start/End: Complemental strand, 32913533 - 32913294
Alignment:
| Q |
86 |
atctttagcagcattagctttatctccagctgcatccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaaca |
185 |
Q |
| |
|
|||||||||| |||| | ||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32913533 |
atctttagcaacattggtcttatctccaactccacccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaaca |
32913434 |
T |
|
| Q |
186 |
ttggtcttatctccaactgcacccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaacattggtcttatctc |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32913433 |
ttggtcttatctccaactgcacccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaacattggtcttttctc |
32913334 |
T |
|
| Q |
286 |
caactgcacccgaggccttgggcttttctttcttggcttc |
325 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32913333 |
caactgcacccaaggccttgggcttttctttcttggcttc |
32913294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 86 - 276
Target Start/End: Complemental strand, 32913359 - 32913169
Alignment:
| Q |
86 |
atctttagcagcattagctttatctccagctgcatccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaaca |
185 |
Q |
| |
|
|||||||||| |||| | || |||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32913359 |
atctttagcaacattggtcttttctccaactgcacccaaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaaca |
32913260 |
T |
|
| Q |
186 |
ttggtcttatctccaactgcacccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaacattgg |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
32913259 |
ttggtcttatctccaactgcacccgaggccttggacttttctttcttggcttcaccagaagcaccattttctttatctttagcaacattgg |
32913169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 86 - 325
Target Start/End: Complemental strand, 32912835 - 32912596
Alignment:
| Q |
86 |
atctttagcagcattagctttatctccagctgcatccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaaca |
185 |
Q |
| |
|
|||||||||| ||| ||||||||| ||| |||||| |||||||||||||||| ||||||||||||||| ||||||| | |||||||||||||||||||| |
|
|
| T |
32912835 |
atctttagcattattggctttatctgcagttgcatctgaggccttgggcttttgtttcttggcttcaccggatgcactattttctttatctttagcaaca |
32912736 |
T |
|
| Q |
186 |
ttggtcttatctccaactgcacccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaacattggtcttatctc |
285 |
Q |
| |
|
|||| ||| ||||| | ||| | |||||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||| |
|
|
| T |
32912735 |
ttggctttacctccagcggcatctgaggccttcggcttttgtttcttggcttcaccagatgcactattttctttatctttagcattattggctttatctc |
32912636 |
T |
|
| Q |
286 |
caactgcacccgaggccttgggcttttctttcttggcttc |
325 |
Q |
| |
|
|||||||| |||||||||| | ||||| |||||||||||| |
|
|
| T |
32912635 |
caactgcatccgaggccttcgacttttgtttcttggcttc |
32912596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 86 - 323
Target Start/End: Complemental strand, 32912748 - 32912511
Alignment:
| Q |
86 |
atctttagcagcattagctttatctccagctgcatccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaaca |
185 |
Q |
| |
|
|||||||||| |||| |||||| ||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||| | |
|
|
| T |
32912748 |
atctttagcaacattggctttacctccagcggcatctgaggccttcggcttttgtttcttggcttcaccagatgcactattttctttatctttagcatta |
32912649 |
T |
|
| Q |
186 |
ttggtcttatctccaactgcacccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaacattggtcttatctc |
285 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| | ||||| |||||||||||||| ||||||| | |||||||||||||||||||||| | |||| || |
|
|
| T |
32912648 |
ttggctttatctccaactgcatccgaggccttcgacttttgtttcttggcttcactggatgcactattttctttatctttagcaacattagctttatttc |
32912549 |
T |
|
| Q |
286 |
caactgcacccgaggccttgggcttttctttcttggct |
323 |
Q |
| |
|
|| |||| ||| |||||| || ||| |||||||||| |
|
|
| T |
32912548 |
cacctgcttccggggcctttggactttgtttcttggct |
32912511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 86 - 325
Target Start/End: Complemental strand, 32913098 - 32912857
Alignment:
| Q |
86 |
atctttagcagcattagctttatctccagctgcatccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaaca |
185 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||||| | |
|
|
| T |
32913098 |
atctttagcaacattggctttatctccagctgcatctgaggcctttggcttttgtttcttggcttcaccggatgcactcttttctttatctttagcatta |
32912999 |
T |
|
| Q |
186 |
ttggtcttatctccaactgcacccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagca-acattggtcttatct |
284 |
Q |
| |
|
|||| ||||||||| ||||||| |||||||||||||||| |||||||||||||| |||||||| |||||| ||||| |||| | ||||| |||| | |
|
|
| T |
32912998 |
ttggctttatctccagctgcacctgaggccttgggcttttgtttcttggcttcacaagatgcactgttttcttaatcttaagcatatattggctttattt |
32912899 |
T |
|
| Q |
285 |
ccaactgcacccgagg-ccttgggcttttctttcttggcttc |
325 |
Q |
| |
|
||| ||||| | |||| |||||||||||| |||||||||||| |
|
|
| T |
32912898 |
ccagctgcatctgaggcccttgggcttttgtttcttggcttc |
32912857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 102 - 325
Target Start/End: Complemental strand, 32912907 - 32912683
Alignment:
| Q |
102 |
gctttatctccagctgcatccgaggcc-ttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaacattggtcttatctcca |
200 |
Q |
| |
|
||||||| |||||||||||| |||||| |||||||||| ||||||||||||||| |||||| ||||||||||||||||| ||||| |||||| || |
|
|
| T |
32912907 |
gctttatttccagctgcatctgaggcccttgggcttttgtttcttggcttcaccggatgcattgttttctttatctttagcattattggctttatctgca |
32912808 |
T |
|
| Q |
201 |
actgcacccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaacattggtcttatctccaactgcacccgagg |
300 |
Q |
| |
|
|||| | |||||||||||||||| ||||||||||||||| ||||||| | |||||||||||||||||||||||| ||| ||||| | ||| | |||| |
|
|
| T |
32912807 |
gttgcatctgaggccttgggcttttgtttcttggcttcaccggatgcactattttctttatctttagcaacattggctttacctccagcggcatctgagg |
32912708 |
T |
|
| Q |
301 |
ccttgggcttttctttcttggcttc |
325 |
Q |
| |
|
|||| ||||||| |||||||||||| |
|
|
| T |
32912707 |
ccttcggcttttgtttcttggcttc |
32912683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 123 - 274
Target Start/End: Complemental strand, 32912441 - 32912290
Alignment:
| Q |
123 |
gaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaacattggtcttatctccaactgcacccgaggccttgggct |
222 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||| |||| | ||||||||||||| | |||||||||| |||| |
|
|
| T |
32912441 |
gaggccttaggcttttgtttcttggcttcaccagatgcactattttctttatctttagcagcattagctttatctccaactggatccgaggccttaggct |
32912342 |
T |
|
| Q |
223 |
tttctttcttggcttcaccagatgcaccactttctttatctttagcaacatt |
274 |
Q |
| |
|
||| ||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
32912341 |
tttgtttcttggcttcaccggatgcaccattttctttatctttagcaacatt |
32912290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 86 - 325
Target Start/End: Complemental strand, 32913185 - 32912946
Alignment:
| Q |
86 |
atctttagcagcattagctttatctccagctgcatccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaaca |
185 |
Q |
| |
|
|||||||||| |||| ||||||| || | || | |||| |||||| || ||| | ||||| | |||||||||||| | |||||||||||||||||||| |
|
|
| T |
32913185 |
atctttagcaacattggctttatttcaacctacttccggggccttaggatttcggtgcttggttccaccagatgcactattttctttatctttagcaaca |
32913086 |
T |
|
| Q |
186 |
ttggtcttatctccaactgcacccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaacattggtcttatctc |
285 |
Q |
| |
|
|||| ||||||||| ||||| | |||||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
32913085 |
ttggctttatctccagctgcatctgaggcctttggcttttgtttcttggcttcaccggatgcactcttttctttatctttagcattattggctttatctc |
32912986 |
T |
|
| Q |
286 |
caactgcacccgaggccttgggcttttctttcttggcttc |
325 |
Q |
| |
|
|| ||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
32912985 |
cagctgcacctgaggccttgggcttttgtttcttggcttc |
32912946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 32912391 - 32912290
Alignment:
| Q |
86 |
atctttagcagcattagctttatctccagctgcatccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaaca |
185 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||| ||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
32912391 |
atctttagcagcattagctttatctccaactggatccgaggccttaggcttttgtttcttggcttcaccggatgcaccattttctttatctttagcaaca |
32912292 |
T |
|
| Q |
186 |
tt |
187 |
Q |
| |
|
|| |
|
|
| T |
32912291 |
tt |
32912290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 210 - 325
Target Start/End: Complemental strand, 32912441 - 32912326
Alignment:
| Q |
210 |
gaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaacattggtcttatctccaactgcacccgaggccttgggct |
309 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||| |||| | ||||||||||||| | |||||||||| |||| |
|
|
| T |
32912441 |
gaggccttaggcttttgtttcttggcttcaccagatgcactattttctttatctttagcagcattagctttatctccaactggatccgaggccttaggct |
32912342 |
T |
|
| Q |
310 |
tttctttcttggcttc |
325 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
32912341 |
tttgtttcttggcttc |
32912326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 265
Target Start/End: Complemental strand, 32912661 - 32912482
Alignment:
| Q |
86 |
atctttagcagcattagctttatctccagctgcatccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatctttagcaaca |
185 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||||||||||||||| | ||||| |||||||||||||| ||||||| | |||||||||||||||||||| |
|
|
| T |
32912661 |
atctttagcattattggctttatctccaactgcatccgaggccttcgacttttgtttcttggcttcactggatgcactattttctttatctttagcaaca |
32912562 |
T |
|
| Q |
186 |
ttggtcttatctccaactgcacccgaggccttgggcttttctttcttggcttcaccagatgcaccactttctttatcttt |
265 |
Q |
| |
|
|| | |||| |||| |||| ||| |||||| || ||| |||||||||| ||||| ||||||| ||| ||||| |||| |
|
|
| T |
32912561 |
ttagctttatttccacctgcttccggggcctttggactttgtttcttggctgcaccatatgcaccgcttgctttagcttt |
32912482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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