View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0696_low_17 (Length: 323)

Name: NF0696_low_17
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0696_low_17
NF0696_low_17
[»] chr1 (1 HSPs)
chr1 (102-292)||(11825332-11825522)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 102 - 292
Target Start/End: Complemental strand, 11825522 - 11825332
Alignment:
Q  102 cgtattttgcggaataagctaaattgcgagtctaagtcaacggaatggttccagaactaaatatatgaattgggtaggcttgagttttacaaacgtattg 201  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  11825522 cgtattttgcggaataagttaaattgcgagtctaagtcaacggaatggttccagaactaaatatatgaattcggtaggcttgagttttacaaacgtgttg 11825423  T
Q  202 attttttcgacacaaaatctaggttgtagcaatatgatccaataaatcaaccaaccaaatgaataatattagaatcctgtactaactaata 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11825422 attttttcgacacaaaatctaggttgtagcaatatgatccaataaatcaaccaaccaaatgaataatattagaatcatgtactaactaata 11825332  T

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